RNA id: XM_043247486.1


Basic Information

Item Value
RNA id XM_043247486.1
length 3363
RNA type mRNA
GC content 0.47
exon number 20
gene id prkg1l
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 21730654 ~ 21751680 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGACGGTTGGTGGCGACCTGTAGTATTAAGAAGCGGCTTTTTAACGGCGCGCTTCACATTTCGGGTGcgtagttgttgttgttgttttttttttgcattgttagatataaaaaggaaagaaaaagatagtCTACGAAAAGAACAGAGAATCTAGTGTTTGTTTTCGTATTAAGAAAACAAGCAATTGGTAAACGATCAAAAACATTGATCTAAAACATTAAGGAAACTGTCAGATCTGTACAGCACTACGTTTCCCATAAGGACTCTTCCTCCTCACTTTGAAGAGCTTATATTTCAGAGATTATCATTTTTAAGCTGTCCAGAGATTTGTTCACTATAAAGAAGCTCTGCATCGTTCATCTCCACCCAGCCGTGACAAAAAAGATAGCCGAATAACAAGGGTGCATTGACATTTTCTTAAAAGTATCcttcgattctgattggttgactgCAATGTTCCACCTGAGATGGTCTTCACTGCAGAGCACGAGATCCAGGGGTGAGGACACTTTGCAAAGAAACTAAAGAAAACATCCTGCAccgttttaaatctgaaagagcACCGTTTAAAAAGCTGAAgcgtctttaaaaagaaagagtcgactctgaatcgtTCAAAAGAGTTTCTTAAATGAGTCCCAAGAGGTTTCACGTTGACGTCAAAATGacacattagcatattgcccgcccccTTGTTGCTCCAAAATTCATTAAATGCCGCTAGACGCTGCATTTGTTTCGCTGCTTTAAAGATCGAGATTGgtggggtttggaaaaattaatttggcagtcgttgaacaaatagtgtaaaaataaatgagctcGAATGCAATGAAAACGGGTTATTTTGTTGCAGAGTTTCATGCAACTCATAGGCTATAGTTGTGTTTAATTCTCTGTGAATGTAGCCCTGcccacatctctctctctctctctctctctctctctctctctctctctctctctctctctctctcgaggtGGAGATATGATTCAAACACTCACACTCGGGTTTTCTTCAGTATTCTTAAAGCTGACCAGCTCCATCATTCTAGACGGGAAATCGCCTTCGGTCTGTTTGCATTCCCCATGTTTCTTGTTCAGGTCCATCGCTCCTGATGGGGACTCTCAGAGACCTCCAGTTCGCACTTCAGCTGAAGATCGAGGAGTTGCGGCAGAGAGATGCTCTCATCGACGAGCTGGAGCTGGAGCTGGACGCTAAAGATGATCTGATCCGCCGCCTGCAGGGGGAGCTCGACCGTCTGCGGCTCTCCGCCCCGGGCGCCTCGGCAGCCGgTCAACAACGTGCTTCTTCCCTGAGAGTGAGGAGAAAAGCGCTGCTGACAGAACCAGTTACCTTGGAGCCCAAACTAGTCTTGCAAAACCCACCAATCAGCCACAGCAAGAGTCAAGAgtCACAGCGGCTGATAGAAGCGGCTCTGGCAGAAAATGAGTGTATGAAATATCTAGACGGGGATCAGATGCGGTGTTTGGTGGATTCTGCCTGTCCCCTGACGCTCAAACAGGGTGTGAGTGTTGTCCAGGAAGGGGATGATGGGACCCAGGCATATATAGTTGAAGaggGAAAGCTGGAGGCATCCAGGGCTGGCCAGAGGCTGCACATCATTGAGCCGGGGATGATGTTTGAAGAACTGGCCCTCGTTTATAACCACACCTGCTCCGCTACTGTCACAGctctGGTGAACAGCAGGTTGTGGGTGATGGAGGGTCAGGTGTTTCAGAGGATCATGCAGAGGAACGGCCTCATCGCTATCACACAGTCTCTGCACTTCCTGCGCAGTGTGCCACTGCTCTGTGTGTTTCCAGAGGATGTTCTTGCGAAAGTGTCTGATTCACTGGAGGAGTCTCACTACAATGATGGTGATTATATCATTCGAAATGGAAATCCAGGAGATAAACTGTACATTCTGAGTCAAGGCCAGGTGAAAGTATTAGAGAAGCACTCGGCCAGTGAGGAAAGCATGACGGTGTCTGTCCTCACCAGAGGGGATTGTTTTGGAGAGAGAGGAGACGACGCGAGGTCGATGAGCGCTCTTGCCGCAGGCGATGTGACATGTCTGGTCGTAGACAGAGAGGTTTTCAAAAAAGTAACTGGAGGTTCGGATGATGCCAGGAAAAATCCTAGCAACAAGGCCAGATCGAAGGCAGACGAAGATGGTTCTGTGTTTGGAGAAACGTCTCTCGGCAGTTTTCAGATGCTGTTTAATCTTGGAGAAGGACAGTACGGTCACACTCAGCTCGTCCATTTGAAGAGCGACTCCAACTGTAAGTTTGCATTGAAGACCATTAGAAAGCAGGCCCTACAGAGCCCAGGCCAAAGAGAGAGGATCCTTGCAGAGAAACACATCCTGATGGATCTCCAGAGTCCATTTATAGTGAGGTTGCATTGTACGTATAAAGATGCTCGGTGCCTATATATGCTGATGGAGGCTTGTGAAGGTGGAGATCTGTGGAATTTACTGAGAGAGAGGGGGTCGCTGGAAGAAGATGCCGTTTGCTTCTACGCAGCGTGTGTGCTGGAAGCTCTAAGTGTACTACACGCCAAAGACATTGTTCACAGAGACCTGAAACCTGAAAATGTGCTCCTGGACCAGCGAGGATACGCTAAACTGACGGGGTTTGGTTGTGCTAAGAAGCTGGGCTCTTTGCGCAGAGCCTGGTCGTTCTGCGGGTCTGTGGGTTATCAGCCTCCAGAGGTCATTCTGCATCAAGGTCACGGCCTGTCCACAGATCTCTGGGCTCTAGGGATGCTGCTGTATGAATTGCTCAATGGCAGTCCCCTGTTCTCCGGCTCGGAGCAGCTGAAGGTTTATACGGCATCTCTGAAGGGAATAGATGAGCTAGAGCTCCCAAAAACCATCAGCAGGACTGCAGCACATCTCATCAAGAGCCTCTGCAGGCTAAACTCCTCAGAGAGACTGGGTCTGAGGAACGGGGTCAAGGACGTCCGCAAACACATGTGGTTTGAAAGCTTCGACTGGGAAGGACTTCAGAAGGGCACACTGACTCCACCAGTGATACCAAACCTTCCCTGTGTCTCTGATCACGGAGGACCAGCGCTCCCGCCGGAAACACACAGCGAAGCAGCACCACTGGAGGATTCGGACTGGGACGCAGACTTCTGATCCGTACAGCGGGGATACTGACCAAGTAAACTGGGCAAAGAAATAATGGACCCTGGTGTTGATCTTGCATTGACTTTGCAGTCTTTTCATTTGTTACTTTTGAGTTGCATTGCACTTCAAATGTCGCtctaaaaaatgcaaatgtacatCATTTCTATTACattccttttttaaatgaaagcttATTTGtgtcagaataaaaatatacaaatagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97707 lncRNA downstream 85971 21571117 ~ 21644683 (-) True G66046
TU97708 lncRNA downstream 92306 21603675 ~ 21638348 (-) True G66047
TU97710 lncRNA downstream 92306 21631309 ~ 21638348 (-) False G66047
TU97458 lncRNA downstream 356063 21373243 ~ 21374591 (-) True G65871
TU97486 lncRNA downstream 374938 21353762 ~ 21355716 (-) True G65897
TU97735 lncRNA upstream 88 21751768 ~ 21753615 (-) True G66071
TU97789 lncRNA upstream 258963 22010643 ~ 22013678 (-) True G66115
TU97806 lncRNA upstream 313218 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA upstream 313218 22064898 ~ 22068757 (-) False LOC122350973
XR_006251666.1 lncRNA upstream 322007 22073687 ~ 22074471 (-) True LOC122350974
XM_043247175.1 mRNA downstream 1437 21697808 ~ 21729217 (-) True acsl2
XM_043247462.1 mRNA downstream 217334 21506779 ~ 21513320 (-) False LOC122350763
XM_043247461.1 mRNA downstream 217907 21506779 ~ 21512747 (-) True LOC122350763
XM_043246073.1 mRNA downstream 298533 21416772 ~ 21432121 (-) True stc1
XM_043246071.1 mRNA downstream 328107 21400577 ~ 21402547 (-) True nkx2.7
XM_043247493.1 mRNA upstream 5995 21757675 ~ 21765505 (-) True rab7b
XM_043246270.1 mRNA upstream 103968 21855648 ~ 21919678 (-) True bmp1a
XM_043247261.1 mRNA upstream 172032 21923712 ~ 21943417 (-) False kansl3
XM_043247262.1 mRNA upstream 172032 21923712 ~ 21943417 (-) False kansl3
XM_043247259.1 mRNA upstream 172032 21923712 ~ 21943417 (-) True kansl3
XR_006251697.1 other downstream 1277523 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2297519 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 2297519 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 2528277 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 2691103 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 19788 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 33024 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 262293 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 277052 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 313218 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile