RNA id: XM_043247520.1


Basic Information

Item Value
RNA id XM_043247520.1
length 5408
RNA type mRNA
GC content 0.53
exon number 20
gene id mtmr3
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2612845 ~ 2645929 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCGCGGTGGCTGCGATGACGACGGGATTCCACGGTGGGACGGGCCGATTCTGCAAATGGCTACGAGGCGCAATTTGTCGATTTGTTCGTCGTTAATCTTCTCTCCTGCGGCTCGGAAGAAAGCGTACCCCCGCTCTGCCTCGCAGGCTGCCCTCGGGTTTCAATGTCATAACACTGAGTGACAGCAGCAGTGCGGGATCATCCGAAACAAACCTCACCTCAGTGAATTTAAAAGTTCGagtGACGtctgcaagagagagagaacaagtgGAAGAAGACACAACAGTGTTGCACCCGCACTCCTTCACCGGGGctatgGAGGAGGAGGGGCAGCAGAGTCTGGAGTGCATCCAGGCCAATCAGATCTTTCCTCGCAAGCCCCCCATCCTGGACGATGACGATCTTCAGGTGCCCTTCCCAGAGCTGCATGGAGAGTGTACGAAGTTCGTGGGCAGGGCAGAGGACGCCATCATCGCCATGTCCAGCTACCGCCTGCACATCAAGTTCAAGGAGTCGGTTGTTaatgttCCCCTGCAGCTCATAGAAAGTGTAGAATGTCGGGACATGTTCCAAATGCACATCACCTGCAAAGACTGCAAGGTCATCAGGTGTCAGTTTTCCACGTTCGAGCAGTGTCAGGAGTGGCAGAAGAGGCTGAACGCAGTGGTCCGTCCTCCGTCCCAGATAGAGGAGCTCTTTTCCTTCGCCTTTCACGCGTGGTGCGTGGAGAAGGAGCAGCATGGGGAACTGTGCAGGCCAGGTGATCACGTGATGTCACGTTTTCATAACGAGGTGGAGCGGATGGGCTTCGACACCCAGAACGCCTGGAGAGTGTCTGAGATCAACAACAAGTACAAGTTGTGCTCCAGCTACCCTCAGCTGCTGCTGGTGCCAGCCTGGATTACTGATAAGGAGCTGGAGAATGTGGCGGCCTTCCGCTCCTGGAAGAGGATTCCAGCCGTGGTTTACAGGCACCAGAGCACAGGGGCAGTGATCGCTCGCTGTGGTCAGCCTGAGGTCAGCTGGTGGGGCTGGAGGAACGCAGATGATGAGCACCTGGTGCAGTCCATCGCCAGAGCCTGTGCCGTGGACAGCAGCTCCTGTAAAGGTGTATCCAACGGCTCCTTCTCCCGCGAGTACACCAACGGAGCCGATCTCTCAGATGTGGACTTCGACTCATCCATGACTAACAGCTCGGAGGTGGAGACGCTGGCCATCCAACCTCGAAAGCTCCTGATCCTGGACGCCAGGTCGTACGCCGCTGCCGTAGCCAACAGAGCCAAAGGAGGAGGGTGTGAATGCCCAGAGTACTACCCTAACTGTGAGGTGGTGTTTATGGGTATGGCCAACATCCATTCCATCCGCAAGAGTTTCCAGTCTCTGCGCTTCCTCTGCACACAAATGCCTGATCCAGCCAACTGGCTGTCTGCTCTGGAGAGCACGAAGTGGCTGCAGCATCTGTCCCTCCTGCTCAAGGCGTCTCTCCTCGTTGTGAACGCCGTGGACCGTGACCACAGGCCCGTGCTGGTGCACTGCTCAGACGGCTGGGATCGCACCCCTCAGATAGTGGCGCTGGCCAAACTCCTGCTGGACCCGTACTACCGCACCATCGAGGGTTTTCAGGTGCTGGTTGAGACCGAGTGGTTGGACTTCGGTCATAAGTTTGCAGACCGCTGTGGTCACGGAGAGAACGCGGAGGACTTGAACGAGAGGTGTCCTGTCTTCCTGCAGTGGCTAGACTGTGTGCACCAGCTCCAGAGACAATTCCCATGTTCCTTCGAGTTCAACGAAGCCTTTCTGGTGAAGCTGGTGCAGCACACATACTCGTGTCTCTTCGGGACGTTCCTGTGTAACAgcgggaaagagagagaggacagacaCATCCAGGAAAGAAACTGCTCCGTTTGGTCTCTCCTCAGAGCCGCCAACCGCTCCTTCAGAAACATGCTGTACTCCTCTCATTCAGAGACCGTGCTTCATCCTGTGTGTCATGTACGCAATCTCATGTTATGGACGGCAGTTTACCTACCCAGCTCTTCACCCACAACCCCTTCAGATGACTCCTGTGCTCCCTACCCTGCACCTGGTGCCAATCCTGAGGACCAGCCCCTCGGCAGGCGTCCTAAAACACGCTCGTTCGATAACTTACCCAGTGCTTGTGAAGTCGGAAACCCGCTGACCTCCAATCGTCGTTCCAGCGACCCCAGTTTGAATGAGAAATGGCAGGACCATCGCAGGTCTCTGGAGCTCAACATCGGGACAGGAGCTGACGGTGCTGCGTCTCCAGACTCAGATGAGAGGGTCAACGGGCAAACCGTGGTGGGGCTTATGGCAACATTGCCCAATGGGGGCACAGAAAATGGGGAGGGGCTCAGGGATGTCAGGTTGCCAATGATGGAAGGCGTCGACGAGGCGGAGCTGACAGTTGGTGTGGCTGTTGGCCAAATGGAGAACATTCTTCAGGAAGCTACAAAAGACGATTCACCACCAGACAGCCACAGAGACGCAAAGGCAGACCTCGCTGACGAACCCTCCTCGCTGAACGGACAGAACGATGATGTTGCACCTTCAGAAGACGCTAGCGTCGAGACACAGCTAACGGCTGATGCTCAAGAGAGCGAACCTAAAAGCCTCGGAGATGCTAATGTCAATGGACATTTTTCAGAAGACGGTAGTTCTGAAGCATCTTCCGCTCTCAGCCAGGGAAGCCAAGACTTAGAAGAAGTAGTCGAGAAATGCACGATACAAGAACACAATCCTTCTCGTAACGCAAATAATTTCCCTCCCAATGGCCTGAGGACTGTGAGTAACGGCCATGGGAGAGAAACCATTGAGCAGGAGAAACGTCTTTCTCTTTTGGAGAGCTCCACAGAGACGCTTACGGAGGACTTGGGCGTTCGGCCTGAGAGCCTGGGACCTTTAACTATTCCACCTCCTCTTAAAACCCTCGCCGAATCATCGTGCCTCAAACAGGGTCTCCGAGCCTCAACCGACCCCAGGACTTTAAACAACACCCTCAAACGGCCGTCTCTCGGTGCCTTTCCTCCCTCCGCTGACCTCCTCCACCCGGTGTGCAACGGAGACTCCCCCGACCCCGAGCCCTCCACGCCTCAATGGGCGGCACGCACAAACGGGGAACGGGCCACCCTCAGCCGGCAGGTGTCGCTCGCCAGCTGCGGCTCGCTGACGCTCCACGCACGGGGCACCTGCTCACACCATCGCTGCCTGCACTTGGGGTTTCTGGGCCGGCCGAGCTTCAGCCCCCCGGAGCCCCCTTCGGCCCGGAGCCATCTAGACGACGATGGCTTGACCCTGCACACGGATGCCGTGCAGCAGCGGCTTCGGCAGATCGAAGCCGGTCACCAGCTGGAGGTGGAAGCTCTGAAGAGACAGGTACAGGAGCTCTGGAGTCGTCTGGAGAGCCACCAAGCCGCCGGGATGCTGCGACTCAACGGAGACATGGGAGATGAAGTGACCTCAATCGCAGACTCAGAATTCAACCTGGAGCCCAACTGTTTGTCCCGCTGCAGCACTGAACTCTTCTCTGAGGCCAGCTGGGAGCAGGTGGACAAGCAGGACACTGAGGTGACCCGGTGGTACCCGGATCATCTGGCCGCTCAGTGCTACGGCTGTGAGAGAGGATTCTGGCTGGCCACTAGAAAACACCACTGCAGGAACTGTGGGAACGTGTTCTGTGCCAGCTGCTGCGATCAGAAGATCCCGGTGCCAAGCCAGCAGTTGTTTGAGCCCAGCCGCGTGTGCAAGACGTGTTTCAGCAGCCTGCAGCCCCCCGCGCCGCCCCTGAACATGGAGCTGGACAAACCCATCACCGCCAGCTCCAACTGACCCCAGGACACCGAAGACGCTTCTTCCCCACCCGAAAGGGAATCATGTACATACGGAacgaggaggagaaggaggctTAGCACTTTCAGAAGCGACAGGGTGAGATGGAGAGCTCGTCTTCGCTTGCGATGAAACTTGTCCTGTACCTGCTGCATAGAGGGAAGCTTTTCTCCGACGGACGGCGGGCGAAAGTAGGATTTCTTTCCTCGTCACCTCACCGAGATGGATCACCGGCGGCGTTCCTGAGAAAGGTGCCGCTGAGACGAGACCACAACATCCTAGCTTCGTTTTTTTGAGTTCTCATCGTCTCTTTTCGTTTCTTTTCGAGGTGATTCAGActctctagttttttttttctcccagtgAAAGACAGACTCTGGTTAGTTTCTTTCTCAGATTGAAAGCGCTCTCCCTCTGTATAGTGACGGGCCGCTAGATGGCGCTCTTGTTTTTTCCTGACCTGCTGTGTGGACGTTGGCCGACGTTCTCACGTAgtgcgttttttgttttttttttgtaacataaatgCGAGACAAATGAGATAATATATTAGAACGATATAAGAATGAGACGTTATAGCATTTAAGATGAGAAATTGTATAGAATTCTTAAATAGTGGCTCACTAATTAGTCACCAAATATaagttgctgtttttgtttttttttcccccaagttGTAGCCGTTTggggtttttctttttaatgtatttcttaAGTTTCTCCCAGCGACGCTGAACGGACGAGTAGAGATGTTGTATGTGACATGCTGCAGTAGggccctctttttttttttttcctcccgacatttatttattatcaggTTTATTTCGTTTGAATCGTATGTTCAATACTGAAATTTGCTAGACCACAGGATGATCAGTGTTGATGGTTTTGAGCTGCGTTTGCACTGAAGATGAAGCCCcttcctctctcacacacacacacacacacacacacaccacgcacAAATCACAATCAAAGTCTCTCTTGTTTCGCTTCccattttatttgcttgttgGAGGTTCATTCAGACAATTCCCTCAATTAGAGTTCACCTAATAACACTTTTactatttactcacccttatgttgttttttttcccctcaaaattAGGATTTTTGGAGACTTTATGTAGCTTTTTTCCATATaagtgtttgtctttttttttttttggagctgGATGGACGCGATGGCTATGGAAAAAGAGCAGCATAAATCTCAAAAACTCCTGTAAATGgcaagagggtgagtaaataatgaccgttttacatttttttccgcGGTGACCTATAACCCTGTCATCGGTCTCGCCAGTGACGTGAGGGTTCAGACTCGTGATGGTGGGCGTTAATTCCTAAAGCTGATGACATCTGCTCCTCTCTGTAGGGCGTTTCGAGTGAAGATGGCGGGACAGCTTTTGCATTAACGCCAATCCatgaatgtgaattttttttgttttccagaaaGAGTAAATTCCATGGgtttatattttgcacattgGTAATCATCAGAAATACACTGTCGCAGATTTCTGtaagaataaaacaaagtgGAATTCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89685 lncRNA downstream 616 2601709 ~ 2612229 (-) False G60604
TU89684 lncRNA downstream 616 2606824 ~ 2612229 (-) True G60604
TU89687 lncRNA downstream 3151 2608453 ~ 2609694 (-) False G60604
TU89632 lncRNA downstream 38841 2507469 ~ 2574004 (-) False G60566
TU89630 lncRNA downstream 104746 2506238 ~ 2508099 (-) True G60566
TU89695 lncRNA upstream 136691 2782620 ~ 2807499 (-) False rad9b
TU89694 lncRNA upstream 158375 2804304 ~ 2813178 (-) False rad9b
TU89696 lncRNA upstream 158375 2804304 ~ 2807499 (-) False rad9b
TU89697 lncRNA upstream 158375 2804304 ~ 2807499 (-) False rad9b
TU89699 lncRNA upstream 158375 2804304 ~ 2813107 (-) False rad9b
XM_043247862.1 mRNA downstream 60658 2521214 ~ 2552187 (-) False bicdl1
XM_043247860.1 mRNA downstream 60658 2521214 ~ 2552187 (-) False bicdl1
XM_043247861.1 mRNA downstream 60658 2521214 ~ 2552187 (-) False bicdl1
XM_043247859.1 mRNA downstream 60658 2521214 ~ 2552187 (-) True bicdl1
XM_043247552.1 mRNA downstream 190672 2420331 ~ 2422173 (-) True LOC122350818
XM_043247822.1 mRNA upstream 5041 2650970 ~ 2816039 (-) False cux2b
XM_043247821.1 mRNA upstream 5041 2650970 ~ 2792818 (-) True cux2b
XM_043247823.1 mRNA upstream 167024 2812953 ~ 2823826 (-) True rad9b
XM_043247825.1 mRNA upstream 167024 2812953 ~ 2823825 (-) False rad9b
XM_043247195.1 mRNA upstream 180547 2826476 ~ 2844716 (-) True si:ch211-166a6.5
XR_006251678.1 other downstream 60659 2523816 ~ 2552186 (-) False bicdl1
TU89626 other downstream 148474 2460931 ~ 2464371 (-) True G60564
TU89500 other downstream 551364 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 551510 2059394 ~ 2061335 (-) False c8h22orf39
TU89104 other downstream 857461 1749147 ~ 1755384 (-) False LOC122349998
TU89698 other upstream 148205 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 386538 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1199524 3845453 ~ 3850590 (-) False lhfpl4b
TU90264 other upstream 1442795 4088724 ~ 4092157 (-) True G60967
TU90343 other upstream 1655063 4300992 ~ 4307499 (-) True G61023

Expression Profile