RNA id: XM_043247528.1


Basic Information

Item Value
RNA id XM_043247528.1
length 2696
RNA type mRNA
GC content 0.48
exon number 19
gene id faf1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 8285231 ~ 8346021 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGGCAGCCGTAAGATGTTTCCGTTGCTTTGAACGCCGATCCAGAACAGCAAAGTGACGataacagaaaaactgaaagccACCAAACACTGACAACACGGCCccaaagagcagcatttatacTCAGTTACGTGCCGCACACTGATAAGCCGTGTCCTGAGCTGCTCTTTTGAAATCGGTGGTTGatatttttggggtttttacATGAGTCGTTAGCCTCTCTCTGCAATGGCCTCCGACAGCAACATGGACAGAGAAATGATCCTGGCCGACTTTCAGgcaTGTACCGGAATTGACAACATTGCTGAGGCGATCACACTTCTGGAACTCAATAACTGGGACTTGGTGGCAGCCATCAATGGAGTGATACCACAAGAAAATGGGATCTTGCAAAGTAATTTCTCAAGTGAAGCATCTCAGACCAGCCCCTATGGACCCCACAACCAATCAGAAGCCACAGCACCTGTGCCCTCAGCCCCGCCTTCTtcagcatcagcatcagcatcggcatcagcatcagcatcatCATCTTCCTCACCCCCATCATCATCCAGCCCAGCCTTCTGCCCTGTCCAGCCCTCCCGGCACATAGTGGAACGGCAGTCGCGGATGCTCAACTTTCGCGTGGAGTACAGACAGCGCTCCACAGAAGTGGTGCTGGAAGATGCCAGCACAGTCGgagatattaaatctattttagaGACCGAGCTACAGGTGCCTGTCtctaaaatgcagttaaaaggCTGGAAGAGTGGAGACGTATCTGACAGTACTGTTCTGCGGAGTTTACATCTGCCTAAGAACAACAGTTTGTATGTGCTCACCCCTGATATCACCCCTTCAGCCAGCACCAGCCAGAGCAGCAGTGCCCAGCAAGGGTTGTCGAATCAAAACTACCTGCTCGTCATTAGCCACCGTGAAGCACAGAGAGATTACAGCCTCAACTTCCCTGCCAGCAAAACCATTCAGGAGGTGAAAAGGAACATTTCAGACCTGACAAACATCCCTGTGCGGCATCAACAGTGGGACGGCTGGCCTGCCTCTGCCTCAGATGACTCGATGACTCTGGCCTCCAGTGGAATCAGTTACCCCTGCCACCACCTGACCGTGTGCAGAAGATCTTCTCCTGCCCTTACGGTGGACCAGACAGACGAGTGCACAGATGTTCACATGGTCAGTGACAGTGAGGGAGATGATTTCGAAGATGCACCTGAATTTGGTGTAGATGAATCTGAAATCTTTGGCATGGGAAGCTCAAGTTGTCGAAAGTCTCCGATGATGCCAGAGAACAGTGAAAATGAGGGTGATGCCTTACTGCACTTTACTGCTGAATTTTCTAGAAGATATGGCGATTGCCATCCCGTGTTCTACATCGGCTCATTGGAAGCAGCATCTCAAGAGGCCTTTTATGGCAAAGCCAGAGATAGAAAACTGCTGGCCATCTACCTCCACAACGATGAGAGTGTCCTCAGTAACGTGTTCTGCTCTCAGATGATGTGCGCAGACTCCATAGTGTCATATCTCAGCCAGAACTTCATCACATGGGCCTGGGACGTTACTAAAGAAGCTAATAAAGCCAGACTACTCACGATGTGTACAAGGCACTTTGGCAGTGTTGTTGCACAGACCATTCGGACGTACAAGACTGACCAATTCCCATTACTTTTAATTGTCATGGGCAAACGGACATCAAATGaagttttaaatgtcattcaagGCAACACAACAGTGGATGAGCTCATGATGAGACTCATGGGAGCCATGGAGATCTTCACAGCACAGCAACAAGAAGACATCAAAGATGAGGATGAACGTGAAGCCAGAGAAATGGTCAAAAGAGAGCAGGATGAAGCTTATCGTGTGTCTCTGGAGGCTGACCGTAAAAAGAGAGAAGCGCAAGAGCGAGAAGAGGCAGAGCAAGTTCGTCAGGAGCGAATCAAGAAAGAGCAGGAGGAGGAAAGAGAGGCTATTCGTCTCTCATTGGAGCAGGCCCTGCCACCAGAGCCCAAAGAAGAGGGCGGAGAGCCAATCAGCAAGCTGCGCATCCGGACGCCAAGTGGCGAGTTTTTAGAAAGGCGGTTCCTGGGCAGCTGTAAACTCCAGGTCCTATTTGACTTCGTCGCCTCCAAGGGCTACCCATCTGACGAGTTCAAACTGCTCACCACCTTTCCACGCAGAATTATAACGCAGTTGGACCCGGCATGGAGTCTGGTGGAGGCTAAACTCTTCCCTCAGGAGACCCTGTTCCTGGAGGCCAAAGAGTAGGACTGATCGGAGACGTCCTGAGGGCGAACAAGAATAAGCAAAGAACTTTTAGCATGATGTCCACAGCGACcagacacacacccacatacacacaagcCTTCACACACTATCACACAGTGCGTTGTATATGAATGCTGAGTGTACATTTTATGCACACAGAGGCCTTCACAAGCACATGGATAAACGATCACTCTCCTCCCATAACTGCAGTGTAATGTTCTTTTTCCACCCAAAACGTAAGGTAaccgagaaaaaaaaacattaaaaataaaaaaaataaacaagcagaGGTGTGGAAGTCTAAAACAGCCAGCCTCACAGACAAGGACTTCTCGCTGAGGCTGCTTTTTAGACATGTTTTGTGttgaaatgaagcaaaaaaaaaaatcaattaaaaaaaaaaaaaaaaaaaaaagacaaataaataaaagt

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0060037 pharyngeal system development biological_process

KEGG:

id description
K20703 FAF1; FAS-associated factor 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251686.1 lncRNA downstream 16014 8253538 ~ 8269217 (-) True LOC122351107
XR_006251685.1 lncRNA downstream 16014 8255469 ~ 8269217 (-) False LOC122351107
XR_006251572.1 lncRNA downstream 52457 8217019 ~ 8232774 (-) False LOC122350139
TU91781 lncRNA downstream 67814 8210043 ~ 8217417 (-) True LOC122350139
XR_006251635.1 lncRNA downstream 330589 7951561 ~ 7954642 (-) True LOC122350891
TU91913 lncRNA upstream 81264 8427285 ~ 8430135 (-) True G62076
TU91990 lncRNA upstream 161870 8507891 ~ 8508123 (-) True G62120
XR_006251637.1 lncRNA upstream 366016 8712037 ~ 8739931 (-) True LOC122350893
TU92069 lncRNA upstream 366202 8712223 ~ 8739953 (-) False LOC122350893
TU92070 lncRNA upstream 366202 8712223 ~ 8713432 (-) False LOC122350893
XM_043246326.1 mRNA downstream 9832 8272484 ~ 8275399 (-) True dmrta2
XM_043247360.1 mRNA downstream 147956 8036622 ~ 8137275 (-) True agbl4
XM_043247643.1 mRNA downstream 522022 7750415 ~ 7763209 (-) True bend5
XM_043247644.1 mRNA downstream 522933 7750415 ~ 7762298 (-) False bend5
XM_043247648.1 mRNA downstream 544775 7688861 ~ 7740456 (-) True LOC122350881
XM_043247198.1 mRNA upstream 10826 8356847 ~ 8371737 (-) True rnf11b
XM_043247944.1 mRNA upstream 26636 8372657 ~ 8391494 (-) True ttc39a
XM_043247945.1 mRNA upstream 26636 8372657 ~ 8387699 (-) False ttc39a
XM_043246729.1 mRNA upstream 46324 8392345 ~ 8416553 (-) False eps15
XM_043246730.1 mRNA upstream 46324 8392345 ~ 8416553 (-) False eps15
TU91784 other downstream 67814 8117008 ~ 8217417 (-) False LOC122350139
XR_006251629.1 other downstream 597669 7678416 ~ 7687562 (-) False spata6
TU91479 other downstream 1184299 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 1468507 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1842249 6431032 ~ 6442982 (-) False LOC122350671
XR_006251596.1 other upstream 46324 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 81594 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 82804 8428825 ~ 8428904 (-) True LOC122351128
XR_006251695.1 other upstream 83232 8429253 ~ 8429320 (-) True LOC122351132
XR_006251694.1 other upstream 83453 8429474 ~ 8429544 (-) True LOC122351131

Expression Profile