RNA id: XM_043247539.1


Basic Information

Item Value
RNA id XM_043247539.1
length 994
RNA type mRNA
GC content 0.39
exon number 9
gene id ppih
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23635149 ~ 23656851 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGTACAGTTCATGGTGTGAGAATTGAGACATATTAATATCGCATATTTCTGCTGTCTGGAGTGATAAAAGCCTTAAAACAGCCATGAACGTTCAGCCTTCAAACCCTAACAACCCGATAGTGTTTTTCGACGTGACTATTGGAGGGAAGTAGGCAGAATGAAGGTAGAGCTTTTTGCAGACATTGTTCCAAAGACTGCTGAAAATTTTCGGCAGTTCTGTACTGGTGAATTCAAGAAGGATGGTGTTCCTGTAGGCTATAAAGGCTGCACATTTCATCGGGTGATAAAGGACTTCATGATTCAGGGTGGTGATTTTGTCAATGGGGATGGCACTGGTATCTGCAGTATCTACAGGGGACCCTTTGCAGATGAGAACTTCAGAATGAAACACTCTGGCCCAGGACTCTTGTCAATGGCAAACAGTGGACCAGGAACAAATGGCTGTCAGTTTTTTATCACCTGTACAAAGTGCGACTGGTTGGATGGGAAACATGTGGTATTTGGAAAAGTGGTGGATGGTTTGCTTGTTATGAGAAAAATTGAGaATGTACCTACAGGACCCAACAACAAGCCCAAGCTACCTATTGTCATTGCCCAGTGTGGAGAAATGTGACGCATCAGAAAGACACATGACATTTGCTTTAAAGACAACAAGCCATTCTGGATTTTGGACTAATTATTCATCTTCTCCattacaaaacataattttttttataggtaATATTGTGGAATCGCCTgattatttgtaattgtttgtagttttatattattcaaaattgaGTTACACCAAAACTGAATGTTATGTCACGATTTGCTTACCTGACCTCTCTTTTATCAGTATTTGCAAATATGACTAAACTTGAAATTCAAGACCGATGCATGCATTCTTTGTACATTCTGAAGGACGAGGCTTTTATTTGTGTCTTTAGTAATGGCCTGTTGGGGGTTTTCTTAAccttaaataaaaattgactcatgttattttttttttaa

Function

GO:

id name namespace
GO:0000413 protein peptidyl-prolyl isomerization biological_process
GO:0001525 angiogenesis biological_process
GO:0006457 protein folding biological_process
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98278 lncRNA upstream 11721 23620927 ~ 23623471 (+) True G66418
TU98273 lncRNA upstream 18510 23615216 ~ 23616682 (+) True G66416
TU98180 lncRNA upstream 200159 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 201447 23432809 ~ 23433745 (+) True G66350
TU98171 lncRNA upstream 229880 23405008 ~ 23405312 (+) False LOC122350936
XR_006251574.1 lncRNA downstream 19583 23676434 ~ 23681832 (+) True LOC122350145
XM_043246995.1 mRNA upstream 1136 23632350 ~ 23634056 (+) True ndufa7
XM_043247315.1 mRNA upstream 22689 23598728 ~ 23612503 (+) True dpp9
XM_043247316.1 mRNA upstream 22689 23598728 ~ 23612503 (+) False dpp9
XM_043247317.1 mRNA upstream 22689 23601937 ~ 23612503 (+) False dpp9
XM_043246660.1 mRNA upstream 38061 23586535 ~ 23597131 (+) False si:ch211-251b21.1
XM_043246391.1 mRNA downstream 1230 23658081 ~ 23664434 (+) True ybx1
XM_043246392.1 mRNA downstream 1231 23658082 ~ 23664434 (+) False ybx1
XM_043247984.1 mRNA downstream 83499 23740350 ~ 23741231 (+) True hes2.1
XM_043246878.1 mRNA downstream 93395 23750246 ~ 23752431 (+) True hes2.2
XM_043246225.1 mRNA downstream 95738 23752589 ~ 23804049 (+) True acot7
TU98282 other upstream 1127 23632383 ~ 23634065 (+) False ndufa7
TU98168 other upstream 483245 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 649608 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1514396 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1517358 22116283 ~ 22117834 (+) True G66010
TU98369 other downstream 95717 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 96610 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 96610 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 98840 23755691 ~ 23783631 (+) False acot7

Expression Profile