RNA id: XM_043247552.1


Basic Information

Item Value
RNA id XM_043247552.1
length 1622
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC122350818
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2420331 ~ 2422173 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCAGGTGCCACAAACCTCAAGACCACCCAGTgttgtttctttcatttgacAAGAAATCATGCTTTAAAGACACTCTCTTCTGTCTTCGTGTCTGTTAAGCATCAGACATCGACTGTATATGGGACACCAAATTTACCAAGCTGTACATGGGAAACAAGACACTTCCCCCTTTTAATCAGGCCAAAAATGTCGAACACAAACGGCTCGTCGCTGTTGCGTCTGGGTGTCATACTGACGATCACATGTGTCATCTCTCTGAGTGTTGTGTTTGTCTGGTTTTCACCTTCAAAACACTGTCCACCTCCAATATTTAGACCTGACCTAATAAACCCTGCCAAGAGCAACAAGTCTGTAACTGAAAAAGCTGAGGACAAATCTCTTTCTGATAAAACAGTGGAGAAACCTATACTTCTGTTATGGGTTTGGCCTCAAGATTATAGGTTTGATTTCATCGACTGCAAAAACTTGTACAATATTGATAATTGCCATCTGACGGATGATAGAGGTCTCTACAACGAAGCAGATAACGTAATCGTTTATCACAGAGACATTCAATGGGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGCTTTGGCTGCATTTGGAATCACCAACCAACACCAAAAGGATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGAAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATCGTAAGCAACAACGATCCTTCAACTGGTGTTGACACGAGGaacatttttttcagagaaCTGAGCAAATACATACAAGTGACTTTGTTCGGAAGAGCTTATGCAAGATTCCTGGATTATAATGACTATTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCCTTTGAGAACTCAATCCACAAGGACTATATCACCGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCTGTGGTGTTGGGTCCTCCGAGAAGAAACTATGAAAACTTTGTTCCCGCTGAGTCCTTCATTCATGTCAATGACTTCTCAGACGCAAAGTCACTAGCTGAGTATCTGCTTCAGCTGGACAGGGATGACAATGCATATCAGCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGCTCATGATCTCTATGATTGGTATTTTAATTGACTAGAACGTTTAtgaaatatgttgttttatatgaACTGCTACTTTTGatacttagatttttttttagctgttcaaagtattttaataaatgattgctTATGGATGAGCTAATAATTAAGACGCTTGAActtgtattttatattccaGCTATGATATAGCTCTTTTCACttggtttttttaatcagttgtaAATAACTCTTGATGTAACGTGGGGAAGAAATGCGTGTGAATATTTATATGCcgctttattatatttacaaactTCCATTTTGTCAGCACaagccaataaaaaaaatgcacatga

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89604 lncRNA downstream 4830 2410413 ~ 2415501 (-) True G60548
TU89581 lncRNA downstream 81487 2338559 ~ 2338844 (-) True G60542
TU89570 lncRNA downstream 137440 2282538 ~ 2282891 (-) True G60532
TU89568 lncRNA downstream 167241 2249342 ~ 2253090 (-) True G60530
TU89557 lncRNA downstream 252084 2166932 ~ 2168247 (-) True G60519
TU89630 lncRNA upstream 84065 2506238 ~ 2508099 (-) True G60566
TU89632 lncRNA upstream 85296 2507469 ~ 2574004 (-) False G60566
TU89685 lncRNA upstream 179536 2601709 ~ 2612229 (-) False G60604
TU89684 lncRNA upstream 184651 2606824 ~ 2612229 (-) True G60604
TU89687 lncRNA upstream 186280 2608453 ~ 2609694 (-) False G60604
XM_043247555.1 mRNA downstream 617 2404210 ~ 2419714 (-) False LOC122350819
XM_043247551.1 mRNA downstream 10298 2408346 ~ 2410033 (-) True LOC122350817
XM_043247554.1 mRNA downstream 13874 2404210 ~ 2406457 (-) False LOC122350819
XM_043247553.1 mRNA downstream 13892 2404210 ~ 2406439 (-) True LOC122350819
XM_043247988.1 mRNA downstream 258328 2154235 ~ 2162003 (-) False LOC122351111
XM_043247862.1 mRNA upstream 99041 2521214 ~ 2552187 (-) False bicdl1
XM_043247860.1 mRNA upstream 99041 2521214 ~ 2552187 (-) False bicdl1
XM_043247861.1 mRNA upstream 99041 2521214 ~ 2552187 (-) False bicdl1
XM_043247859.1 mRNA upstream 99041 2521214 ~ 2552187 (-) True bicdl1
XM_043247520.1 mRNA upstream 190672 2612845 ~ 2645929 (-) False mtmr3
TU89500 other downstream 358850 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 358996 2059394 ~ 2061335 (-) False c8h22orf39
TU89104 other downstream 664947 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 666415 1749147 ~ 1753916 (-) True LOC122349998
TU89626 other upstream 38758 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 101643 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 371961 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 610294 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1423280 3845453 ~ 3850590 (-) False lhfpl4b

Expression Profile