RNA id: XM_043247553.1


Basic Information

Item Value
RNA id XM_043247553.1
length 1494
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC122350819
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2404210 ~ 2419714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGCTAGCATCGGACATTAAAGCATTAGCGTAATGTTCTCGTTCCGCTTTGTATCATGTTAGGTTTTGATCTTAAGTTTTGAAATGGCGAGTGGGAAAATACATTTGTACAAGTGAGCTGGGGTATGACGAAATCatgctttaaagaaacagtCTTCCGTGTTTCTGCCTATTAATCATCAAACATCGGCTATATATGGAACAccaaattacagatttttttaatcagGTCAAAAATGTCAAACGCAAATGGCACATCACTGTTGCGTCTGGGTGTCATACTGCTGATGGCAGGTGTCATCTCTCTGAGCGTTGTGTTTTTCTGGTTCTCGCTTTCAAACAACTGTCCATCTCCGGTTTTTAGACCTGACCGATATTCACAAATCATTGCTGACAAGAGCAGCAGGCCTCTTGCTAATAAGGCAGAAGGGAAACCTTTAGTTCTGTTATGGGTTTGGCCACAAGATTACAGGTTTGAATTCAGTGACTGCAAAAGgtttttcaatattgataattgCCAGCTGACGGATGATAGATCTCTGTACAACGATGCAGATGATGTCATCGTTTATCACAGAAACATCAGTAAAGATCTGTCCAACCTTCCTCCATCTCCTCGTCCTCCGTTCCAGAGGTGGATTTGGTTGCATTTGGAATCACCAACCAACACCAAAATCATACCGGGTCTGGAAAACCTGTTCAATCTCACTCTCAGCTACAGACAGGATGCTGATATTCCCGTACGGATGAGGTTGATCACCAGTAAGGAACCTAACAAGGATTTTGTGATTCCCAAAAAGGACAAACTGGTGTGCTGGATTGTAAGTAACAACAATTCCACAACTGGTGTTGACAGGAGGAACGATTTTTTCAAAGAATTCAGTAAATATATCCAAGTGACTTTGTTCGGAAAAGCTTATGCAAGGTTTCTGAATTATACTGACTACTATCCAACCCTGGCTAGCTGCAAATTTTACCTTGCTCTTGAGAACTCCGTCCACAAGGACTACTTTATGGAGAAGATAAACGGACCGCTTGCAGCAGGGACCGTCCCAGTGGTGTTGGGTCCTCCGAGAAGAAACTATGAAAACTATTATCCCGCCGAGTCCTTCATTCATGTCGATGATTTCCCAGATGAAAGGTCGCTAGCTATGTATCTGCTTCAGCTGGACAGGGATGAAAATGCATATCACCAGTACTTTAACTGGAGGAAACATCTCACTCCAAGTCCTCATTTAATATTACAGACACAAGAGTTTATTCTGGCTATCTGCACTGCCTGTGATCATGTAGCACGACACAGAGAATATAAAGAAGTTCATGATCTCTATGATTGGTACTTCAGATAAAGTCATCTCAGGTTTTCGTACATCATCAGTCACTGACTATaatgtttatgaaataaattgtaatttatattatacgTTACTTTTGAGATTAGACTTTGTAACTATTTTGGTGAAAGTGTTCAttaaatgaagtgaaaatgCTCATA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008417 fucosyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89581 lncRNA downstream 65366 2338559 ~ 2338844 (-) True G60542
TU89570 lncRNA downstream 121319 2282538 ~ 2282891 (-) True G60532
TU89568 lncRNA downstream 151120 2249342 ~ 2253090 (-) True G60530
TU89557 lncRNA downstream 235963 2166932 ~ 2168247 (-) True G60519
TU89531 lncRNA downstream 247817 2153614 ~ 2156393 (-) False LOC122351111
TU89604 lncRNA upstream 3974 2410413 ~ 2415501 (-) True G60548
TU89630 lncRNA upstream 99799 2506238 ~ 2508099 (-) True G60566
TU89632 lncRNA upstream 101030 2507469 ~ 2574004 (-) False G60566
TU89685 lncRNA upstream 195270 2601709 ~ 2612229 (-) False G60604
TU89684 lncRNA upstream 200385 2606824 ~ 2612229 (-) True G60604
XM_043247988.1 mRNA downstream 242207 2154235 ~ 2162003 (-) False LOC122351111
XM_043247584.1 mRNA downstream 266130 2135208 ~ 2138080 (-) True LOC122350843
XM_043246916.1 mRNA downstream 314917 2082041 ~ 2089293 (-) True slc25a25a
XM_043246169.1 mRNA downstream 322707 2076147 ~ 2081503 (-) True zdhhc12a
XM_043247301.1 mRNA downstream 328614 2071889 ~ 2075596 (-) True seta
XM_043247551.1 mRNA upstream 1907 2408346 ~ 2410033 (-) True LOC122350817
XM_043247552.1 mRNA upstream 13892 2420331 ~ 2422173 (-) True LOC122350818
XM_043247862.1 mRNA upstream 114775 2521214 ~ 2552187 (-) False bicdl1
XM_043247860.1 mRNA upstream 114775 2521214 ~ 2552187 (-) False bicdl1
XM_043247861.1 mRNA upstream 114775 2521214 ~ 2552187 (-) False bicdl1
TU89500 other downstream 342729 2059394 ~ 2061481 (-) True c8h22orf39
TU89498 other downstream 342875 2059394 ~ 2061335 (-) False c8h22orf39
TU89104 other downstream 648826 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 650294 1749147 ~ 1753916 (-) True LOC122349998
TU89626 other upstream 54492 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 117377 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 387695 2794134 ~ 2813107 (-) False rad9b
TU89795 other upstream 626028 3032467 ~ 3035092 (-) True G60679
XR_006251616.1 other upstream 1439014 3845453 ~ 3850590 (-) False lhfpl4b

Expression Profile