RNA id: XM_043247559.1


Basic Information

Item Value
RNA id XM_043247559.1
length 3548
RNA type mRNA
GC content 0.49
exon number 3
gene id adra1aa
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3015349 ~ 3033899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGATTCACTCTTCTTTGAGGTGATGTGCCATCGCTGGCCAATGGCCACGTCCACATCTGCGAGCCCAGAGCGCAGCGGCACCAAAGTTTGTGCGTAAAGAAGGCGGCGCGGCGCGGGGCGCCATGACTCACTCGCTGTCACCTCCTCTGAGAAACGCCGATGTCCCGAGGACCCCTCCGCTTAAATGCGCGCGTGGAAACGCAGAACTACACTTGACTCGCTGAACTCGAGATCTGCCGTTTCCACGGCGATGACAGGAGGTATCGAAGCGATGAACCGGATACGCGCCGCGCGTGCGTCTACCCAAACACCTCCGGATCGAGTTCTCGCGTTCGCCGACGCGCTGCTGAGGGTTCATCTGTCTTCAAAACGAACCAGCATGGCTGCTTTTCGACCAGACCTCTCCTGATTGAAGCCGTTCGCCTAAAAAACTGTGTGACTGCTCTTCAGCCAAAAATATCTCCTCAGCGTATGCCAAAGTGCTTTTAGCTTTGTCCTTGTTATCCGCTTTGCAACCTCAGTGGCATCAGCCAACTCCGTGCAGACTTTGAATGCGGATCCGATTCTGAAATGACCCTCGGCACCGTGTGGACTATTTCCAACCGCTGCAGACGCGTGCGAAAAGACGACAAGTTCTTGTTTTACAAAGTGCGCTAAAACATCAACAGTGCTTTATGAATGtgcagagagagatggagaacgATTCGACACCTTCGCACGTCGATGCATTGATGCATATCTAAAAAAGATCACTCGTGCATCAAACCTAATGCCTGGAAACTACAGACAAACCTCTTTTGTACCTTAATAGATCACACAGATTGCAGCAACGACGCTTGTGTCATTCTCATTGTTCTGTATGATGTTGCAGCTGCACATGGTTATGAACATGTCAAAACAACCCTTGAATTTATGACTTCATGACAAAAGAATCTGACATTCTCCGCAGCATAATATGTTTAGCTCCTCTTGTTTATTCCTTCACCCACAGCTATTTTCCACGAACATACATCATTAAAAGCTCATCTAGGAGAAATGAGGAATGAGACACAACAGGTTAAATTTCATCACGCTCCTTCATTGCGATGCTGGAAATGCCCCAACGTTCTTGTACAAAGGCCAATGCAGTAGTGccgttttcagtgttttttttggagGGAGTCCAATATTAAGGTGCAaatcaaactgattttttttttaaatgcctggACATTTTGAACAGATGATTCCCCTCAAAGACAACATGACCCCGGAGTCGTTCCCCGAAAACTGTAGCAACTGCAGCCAGGTTCTCGTCCCGGAGCTGAACGTCGTGAAGGCCGTCGTCCTGGGTATTGTGTTGGCGATCTTCATCATCTTTGGCGTTCTGGGCAACATCCTGGTCATCCTCTCGGTGGCTTGCCATCGCAATCTGCGCACAGTTACGCATTACTTCATCGTGAACTTGGCAGTTGCCGATCTTTTGCTGAGCTCTACCGTTCTTCCGTTTTCTACGGTCTTTGAAATGTTGGGTCGTTGGATTTTCGGACGCCCGTTTTGTGACGTTTGGGCGGCAATGGATGTCTTGTGCTGCACTGCTTCAATCATGAGCTTGTGTGTTATTTCAGTGGACCGATATATCGGCGTTAGTTATCCTCTGCAATACCCATCCATTGTAACGGAGCGACGGGCATTGCTTGCACTCATTGTTTTGTGGGCTCTGTCCATTACCATTTCAATTGGACCTCTTTTTGGATGGAAGGAACCGGCGCCGGAGGACGAATCTATATGCAAGATAACAGAAGAACCCGGCTATGCCATTTTCTCCGCTTTAGGGTCCTTCTATCTTCCCCTAGTGGTGATTTTGTCGATGTATTGCCGCGTTTACGTGGTCGCGAGGAGGGAGACCCGAGGACTGATTAGCggacagaaaacagaaaagtctGATCACGCCACCGAGGCCGTAACTTTGCGGATACATCGCGGGAACACCACGGTGTCCGAGGACGAGGCCTTGCGCAACCGGACGCACTTTGCATTGCGTCTGCTCAAGTTCTCCCGAGAGAAGAAAGCCGCCAAGACCCTGGGCATCGTGGTTGGATGCTTCGTCCTTTGTTGGCTTCCGTTTTTCCTGGTTCTTCCGATCGGTTCCATCTTCCCGACCTACAGACCCTCGGACACCGTCTTTAAGATCACGTTTTGGCTGGGCTACTTCAACAGCTGCATCAACCCCATCATCTACCCCTGCTCCAGTCAGGAGTTTAAGAAAGCCTTCCTGAGCGTGTTGGGCGCCCGCTGCCTCCGCAAGAGATCAACGACGTCCCACGCTCTCTACCAGAGCCACAGCCCCCGGCACGGCCAGTCTCAGATCCTGGGCCTGACCAGCCGCGACAACCCGTCCCGCCTGAGCCCGTCCTCCTCCGTCGCTCTCTCCCGCAGCCCGTCCTCGCGGGACGGCCGGGAATGGCAGGCCCCTTCCCGGACGTCGTCGGCGGGGACGACCGGGGTCAGCGCGGGGGTGAGCGTGGGAGCCAAAGTGGCGGGAATGTGCGGGAAGAACCTGCTGAGGACGTGCTGCTGCGTGAGAATGGATCCTCCGCAGCCCGAGCCTCCCCCGCACAACTCGCTTCCCGTCATCAAAATCCATCAGCTCTCGCTGTGCGAGGACGGGGACGCGGTGTAAATGAGCGCTCTGGGGAAATCACCGCACTCACGCTGGCTGCGATGCCACTTTGCCACCTGACAGAGCCTCGGACCGGAGAACACAAACCGACGAAGGAAAAAAAGCGTTTGACTGAAACGATGGGGGCATGGGAAGCTGCTGCGAGACGGCCGATGCTTTACAAAGGCACGGGTCTTTCAGAGTctttatttactcactctcgtGTCTTTCCGAACCCGTGGAATGACAAGCGGTGaactgaaatgcaaatgtcatttttgcagCTTCGACAGAGAGAAGTGCATTAACTTTAACCCTGTAAAGCCTGAAATAAATGTAGGGgaaaactacttttttaatggagtataaagtataaaataggTTTGCATTTGATGCATCAGGCGTTTATGGCTCACAATATAAAGTAAGCCTATAGGACAATACGGTTTACaattacaatacaatttttttaaactcactTTTATTCAAAGGCCCAAACGTGACATTTGATGTGGACCTTGATATCTGCATGGCCTAAAATATGAAGTGAAGTGAGATTTTTCACTTGCGACTTTATCTcccaataatgtgttttaataagaCGACATTCAATGCTTAGGTTTATGATCAAATCTCTGTAGTTTTAAAACCTATGCAGTTTAATACAGTGATGAACAAATAAATCTTCCTCGAAAGCATATTTGATTCTCACATTTCAAcctgatttttctaaaaaaattatgtatagaCAATCAAGTAAACATACTTCTGTCTGCTAAGTGTTcctcttaaaatattattaacaatataaaagctattctaaaatgtactttagaaaaatctgtgaaaataaaaacaaaaagacatgtGACGCACAAAAAGgggatttttatattattattacact

Function

GO: NA

KEGG:

id description
K04135 ADRA1A; adrenergic receptor alpha-1A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251539.1 lncRNA upstream 14367 2998907 ~ 3000982 (+) True LOC122349907
TU89440 lncRNA upstream 61355 2953016 ~ 2953994 (+) True G60452
TU89328 lncRNA upstream 381334 2632717 ~ 2634015 (+) False G60369
TU89329 lncRNA upstream 381334 2633145 ~ 2634015 (+) True G60369
TU89315 lncRNA upstream 403122 2610317 ~ 2612227 (+) True G60361
TU89774 lncRNA downstream 21528 3055427 ~ 3056019 (+) True G60660
TU89775 lncRNA downstream 22400 3056299 ~ 3057846 (+) True G60661
TU89782 lncRNA downstream 42977 3076876 ~ 3080723 (+) True G60668
TU89788 lncRNA downstream 51857 3085756 ~ 3086373 (+) True G60673
TU89844 lncRNA downstream 535595 3569494 ~ 3570284 (+) True G60718
XM_043246714.1 mRNA upstream 62665 2948990 ~ 2952684 (+) True gatd3l
XM_043246712.1 mRNA upstream 68000 2943281 ~ 2947349 (+) True LOC122350330
XM_043246713.1 mRNA upstream 68385 2943282 ~ 2946964 (+) False LOC122350330
XM_043246715.1 mRNA upstream 72144 2939263 ~ 2943205 (+) True tmem127
XM_043247470.1 mRNA upstream 81844 2930254 ~ 2933505 (+) True ufd1l
XM_043247953.1 mRNA downstream 463525 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA downstream 463525 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247890.1 mRNA downstream 521699 3555598 ~ 3568917 (+) True vsig8b
XM_043247345.1 mRNA downstream 541632 3575531 ~ 3576550 (+) True LOC122350663
XM_043247089.1 mRNA downstream 614103 3648002 ~ 3652067 (+) True nefmb
TU89218 other upstream 975513 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 979369 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 982286 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 997829 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1096978 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 814715 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 890962 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1014720 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2070671 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2070671 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile