RNA id: XM_043247566.1


Basic Information

Item Value
RNA id XM_043247566.1
length 836
RNA type mRNA
GC content 0.49
exon number 4
gene id mrpl40
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2055331 ~ 2058725 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTTACTCTGAAGTAaccgaagaagaagaagatccACATTGGTCCGCCGGAAGGAGTAAAACGCTTCTTAGTTGTTCAACGTCGATGCGGGTAAAGTCGACATTTCTGTAAATCATGGCGGGGATTCTGTGCCGTACTGCAAGCCGAATCATATCGAGTCAAGTATCGTGTAGTACCTCTGTGGTTGCTGTCAGACACAGTCACTGGTTCACATCAATGCTTTCCCTGAAAACCTCTATGCCACTGAGAGCAGAacccaagaagaagaagaaggtggaCCCTCGTCGTGAGATGCTGATGAAGGAGCGTCTGAAGAAAAAGCTCAAGAAGCTGGAGAAAGTTCCGGCAGAACTGATTCCTATTGAAGACTTTATTATCCCGGCTAAGTGCTTTGATGAGACCagGATCCGTGACGCTCCTAAGCTGTCTTTTGAGGAGAGCGAACGCAGAGCCCTTCTGCTGAAGGACTGGTCCAGATACAAGTACGCCCAGCACCAGACGGAGATGGACGCCATCAAAGAGGCGCTGGAGGCCCAGAGACAAGCTCTGGATGAGCTGAAGCTGGAGTCAGAAGAGCTTTATAAAGCGGCGCTCAGCCCAGATATGGATATGTTCCCTATCCGGCACGAAGGGCCCAGCTACACCCCGGCCATCACGAACTACGAGGCTCCAGAGGGCAAATACAATGACGTTACTCGGGTTTACACGCAGTGAGCTCGAGCGTGACGCCCGCGTTTTCTGCTCTGATGAGAACAAACCGAATGAACTGTATTACCATGGTGTAGATTATCGTTCTTCATGTGTTAGTCATcattaaatcatgtttaatattttaa

Function

GO: NA

KEGG:

id description
K17421 MRPL40; large subunit ribosomal protein L40

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89181 lncRNA upstream 10682 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA upstream 10682 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA upstream 10682 2041502 ~ 2044650 (+) False G60279
TU89178 lncRNA upstream 10682 2043191 ~ 2044650 (+) False G60279
TU89185 lncRNA upstream 12868 2041502 ~ 2042464 (+) False G60279
TU89205 lncRNA downstream 94746 2153471 ~ 2156394 (+) True G60296
TU89206 lncRNA downstream 100589 2159314 ~ 2162044 (+) True G60297
TU89233 lncRNA downstream 104582 2163307 ~ 2165242 (+) True G60323
TU89239 lncRNA downstream 134232 2192957 ~ 2204310 (+) True G60328
TU89248 lncRNA downstream 285211 2343936 ~ 2344169 (+) True G60335
XM_043247450.1 mRNA upstream 15507 2037699 ~ 2039825 (+) True LOC122350758
XM_043246237.1 mRNA upstream 20960 2030824 ~ 2034372 (+) False LOC122350053
XM_043246854.1 mRNA upstream 35298 2014859 ~ 2020034 (+) True polb
XM_043246853.1 mRNA upstream 40648 2006084 ~ 2014684 (+) True enkd1
XM_043247582.1 mRNA downstream 2816 2061541 ~ 2069288 (+) True gle1
XM_043247302.1 mRNA downstream 11093 2069818 ~ 2071669 (+) True si:ch211-51h9.7
XM_043246917.1 mRNA downstream 37434 2096159 ~ 2103906 (+) True naif1
XM_043246919.1 mRNA downstream 37441 2096166 ~ 2103906 (+) False naif1
XM_043247803.1 mRNA downstream 47665 2106390 ~ 2133931 (+) True fam102aa
TU89218 other upstream 15496 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 19352 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 22269 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 37812 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 136961 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1789889 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1866136 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1989894 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 3045845 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 3045845 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile