RNA id: XM_043247570.1


Basic Information

Item Value
RNA id XM_043247570.1
length 3120
RNA type mRNA
GC content 0.47
exon number 17
gene id fhip2b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20344434 ~ 20351986 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTGCTATCCCTAATGCAGACAGATAGCATCTCTCAAGCTAAGCAGCCCCATAAACAATGTTTACTATATACACTAGCGCCGTATAACGATATAAAGATGTCCCAGACTTCACATAGAATTTGACAAAACGCTGCTGGGATCCAGCTATGGACATGTTTAATAAAGTGACGGCTTTTCTGCAGCAGGCCTTGGAAACAAGGGAGCCGTCGATAAACCTGCTGGACTCTTTTGTGGATCACTGGAAAGCAATAACCAACTATTACATTGAAACTACAGATGAGTCTCGTCCAGTGAAGCAGACAGACATCCCATGGCGGCTGAGACAGATGCTGGACATCCTGGTGTACGAGGAGACACAGCAAGGAGAGGAAACGGGTCCCTGCATGGAGTACCTGCTCCAGCACAAAATACTAGAGACGCTTTGCACGCTGGGAAAAGCACAGTATCCTCCTGGCATGAGTCAACAAGTGATGCTGTTCTTCTCTAAAGTCCTGAGCCAGATCCAGAAGCCTGTGCTGCATTTAATCAACGTCTATCGGCCCGTGCAGaaaCTAACCCATCTATGTGGACTCCCTGATTCAAAGACTGAAACAGAGGAGTCTCAGTTTCTATTTGCTGTTTGCACTCGTGTCAGAAAAGACCCTTACGTCCTCAACTACATCCTCGAGATCACCAAAGACCCTCAGAAGAGGAGCAGCTCTACCTCAGACGAGGCTGTGGAGGAGGGAGCCTCCAGCCCTGAGAGGTCACCGTCTCCCTCTACCAGCGCTGCCTCCTCCTGTCCCTCCACATCACCTCAGACAGCCCCGGGCATCATCCCTGTACTCGTGCACCTGGCGAAAAGTCAGAAAAGTCGTGTTGTGCTCAGATCCATGGAGAGTTTGCTGCTGCTGGTCAGTTTACCTCAAGAAGACACCGGACATCTGCTGGCTGAGCAAACGCCTCTGTGTCATCTCCTCGCTCAGAGGCTGACCGAACTTTACTGCCTCATCCCCTCATCCCTCGACCCTGCGGACATTCACAGCTACTCCGGCGCACAGTGGAGGGATCAGCTGACGCAGGACACTACAGAGGAGAGCCAGTCGTTTCCTGGCAGTGAGAACGTCCACAGGTTCTTCTGCTTTTTGGACTACTGCAATGAGCTGACCAAGGAAGCACCAAGGGCACTTGGTGTTAAAATGGCCAGAGCAATTCACCTTCAGTGGCTTAAAGGAGTCATTCAGCCTCATTTGCTTCAGATGTCAGAGGTCGGGATCCTGGTGCACACCGCTCTGCTGTCCTGTTCTGTGCGTCACATACGTTCTCCTGCGCTCCTGGAGGAGCTGGTTCAGTTTCTGCTGGGCAGCGACACGCACTATGAACAGCgacaggacacacacacgcacgttcTGCGTTACCGTCTTATTGAACACTGCAATCACATCTCAGACGAGATCAGCATCACTACGTTACGTCTCTTTGAAGAGCTTCTACAGAAGCCCAACAAGAGCATCTTAACCAATCTGGTGCTGCGTAACATTGAGAAGCGCAGCTACAGGCTGCCTGGGTCAGGGGTCACGGACGAGAGGCACGGAGCCGAGAGTGACGTCCTGGAAGAGTCTGAGGAGCTGGAGGAGGATCCCTTCTTCACAGACATGTATGAAGACAGTGGGTTCGGAGGTCAGGAGCCTCTTCTGTCTCTGCCCAGCGTCAGAGAGAGACCTAATCCCAGTGAGCACACACAAGTTGCTGCCATCGTCAATAGctTCTTGTGTTTAGTGCCCCAAGAAGCAAAAACTTCCCATCTGGTGCAGGGAGCAGGATATGACACGTATGTTCATGATGCACACAAACTGTTAAAAGAATGTACTGTTCTTTCACGGGACTGGAACTGGCCAGATTCTGCCAAAACCAATGAAACCAACCCAGCTACAGACTTCTATGAAGGACACTTCCTGCAGATCCTGTTTGACCGTATTGCGCGCATACTAGAGCAGCCGTATGAGCTGAATCTTCAGGTGACGTCAGTTCTGTCCAAGTTAGCAGTGTTTTCTCACCCTCACCTGCACGAGTACCTGCTGGACCCGTACATCAGCCTGAGCCCTGGAGCGCGGTCGCTCTTCTCCACTCTTGTCCGGGTGATCGGAGATTTGATGCAGAGGATCCAGCACATCCACGGTGTGACGGACAAACTGATGATGATCAGGAGACAGCTGATGGGGCTGGAGGAGGAGACGATGGtggatcatgtgaccctgttgAAGGGTGTTATAGTTCTGGAGGAGTTCTGCAAGGAACTGGCTGCTATAGCGTTTGTCAAACTACCCATAGAAGAGCAATGAACCTATGATGCTGAAACCAAAGACCCTACAACAGATCAGCACCCAACAGCATCTGTTGGAGGACTCCATCGCTGGGAAAACAAAGTGGATTTGCACAGAACTGAGTTAAGTGGCAATATTTATAGATAAAcaagtcacttttgattaacGTTGTCAAGGAGGAGTCAACCTGTCTGATGGTAGTTTTGCCcaagataaaatatttaaaaaattcagaCTGGTGCTACAGGATTGTACAGCGACTGTGATGTACGAAGTCATCTTGctgaattattacatttcacTTTAAGTGGAAGcaataggaaaaaaatatttgtctcttgcacactatttaatttttttactatattctatattttatagaaGTTTTAGGCCCAATCAGTTCTCTCtgttatggttttgtttttgcattcagATATATGCAATTGAAAACCTGATCTCAGATCAGGATTCTtacactatttttaattttagacatTTGCACATCCCGTCATCAAATTGTCTTTCTGAAATACAAACTGGAGTCGTTTAAGTATATCATAATGGCAtgtaaagtaattttatttatctttaatctACTTTCTAAAGCCTGTGAATAATcagtgttgttttatatttctgtatgtTATAAGGCTGAATCAAAGGGCCGGAGAGGTACACTGATTCGTTTGGTTTGTGTGGTTGTGATTTGCCATTGGCCGCTAATCacaacagatctttattttctaGCAGTCTGACAAGTGTACGCAATACATGTTGAATTCTGCTGCCACAGCAATAAACCCCTAAAATATTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96817 lncRNA upstream 36632 20240698 ~ 20307802 (+) True G65478
TU96818 lncRNA upstream 36632 20240698 ~ 20307802 (+) False G65478
TU96764 lncRNA upstream 140852 20182414 ~ 20203582 (+) True G65446
TU96765 lncRNA upstream 140852 20191199 ~ 20203582 (+) False G65446
TU96758 lncRNA upstream 205070 20135252 ~ 20139364 (+) True timm17b
TU96850 lncRNA downstream 66123 20418109 ~ 20455290 (+) True G65497
TU96857 lncRNA downstream 88823 20440809 ~ 20441900 (+) True G65504
TU96848 lncRNA downstream 105253 20457239 ~ 20459236 (+) True G65496
TU96845 lncRNA downstream 108147 20460133 ~ 20461465 (+) True G65494
TU96859 lncRNA downstream 112772 20464758 ~ 20465113 (+) True G65506
XM_043247961.1 mRNA upstream 1492 20308907 ~ 20342942 (+) False si:dkey-220o5.5
XM_043247960.1 mRNA upstream 1492 20308909 ~ 20342942 (+) True si:dkey-220o5.5
XM_043247106.1 mRNA upstream 39485 20295511 ~ 20304949 (+) True LOC122350540
XM_043247569.1 mRNA downstream 8515 20360501 ~ 20389256 (+) False adam9
XM_043247568.1 mRNA downstream 8524 20360510 ~ 20389256 (+) True adam9
XM_043247160.1 mRNA downstream 38047 20390033 ~ 20413813 (+) True ogdha
XM_043247163.1 mRNA downstream 38047 20390033 ~ 20413813 (+) False ogdha
XM_043247159.1 mRNA downstream 38047 20390033 ~ 20413813 (+) False ogdha
TU96674 other upstream 310827 20030057 ~ 20033607 (+) False rfk
TU96285 other upstream 1070692 19272101 ~ 19273742 (+) True pqbp1
TU96288 other upstream 1192129 19119944 ~ 19152305 (+) True G65105
TU96270 other upstream 1248363 19094947 ~ 19096071 (+) True G65100
TU95945 other upstream 1920640 18418965 ~ 18423794 (+) False sb:cb288
TU96852 other downstream 77033 20429019 ~ 20431387 (+) False LOC122350816
XR_006251701.1 other downstream 126206 20478192 ~ 20478298 (+) True LOC122351139
XR_006251702.1 other downstream 129300 20481286 ~ 20481392 (+) True LOC122351140
XR_006251544.1 other downstream 850462 21202448 ~ 21204346 (+) False ankrd39
XR_006251543.1 other downstream 850495 21202481 ~ 21204346 (+) False ankrd39

Expression Profile