RNA id: XM_043247581.1



Basic Information


Item Value
RNA id XM_043247581.1
length 910
RNA type mRNA
GC content 0.45
exon number 2
gene id nppal
representative True

Chromosome Information


Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23422672 ~ 23423662 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TTTCCCGGCGAAATAAAAGCGCGCACCTGGACACGGTGCTTGGGTACGAGCGAAGAGTCAAGGCAGCCGCGCAACAGCCACCACCTCCAGACCACTCCCGCAACAATGATCGCCAACAACATCTCTGTTTTCTGCATGTCTTCACTTCTGCTTTTAAACTTGGTCGGTGCCAAACCAGTCACCAGTTTACAGCAAAGTCTTAAGCAGTTGTTAGACGAAGAGGCGAACACGCCGTTTGCGGAGTCGGAGGAGTCGGCGATGGAGCAGAAAGATGCGAGATCCGAGAAGAGCGCGCTGGACGAGCAGATGTGGGATTCAGACGCGCGCAACTCAGCGCTGGCGGGAAAAGATGGCGCCATCGAGCGCCTTCTGGGCGACTTGCTGTCCACTTCCAAGCGCACCTGGAGTCGATTCAAGAAAGGCGGGCTAAGGAGCTGCTTTGGGGTCAGACTCGAGAGAATCGGGTCTTTTAGCGGACTCGGGTGTTAGGAGGAGGTATGTTAGGAGATGTCAGGTCATCTCGGCCAGATATAAACATGGAAAATTGTTCAAAAGCGTATTAGAAATAAAACGAGTCATGTCTTGTTACTTCATGTCATGTCACTTCTTGAAGGTTGGGACTTTGAAATACTTGACACGCTTTGGCAGGCGCATCTTCgattagaaataattaaaaaaaaaaaagaagaaaataattgtttaaaaagtttacCGTAGATTTGTGTTCAGGTGATGTTGTATGTGttggtcattatttatttaagatttagacatgtaaatagttttgtttttgaagtttcCATGACTGCTGCTTTGTACTGttgcatctatttatttatttgtgtatttatttatgtcctCTATAAATCCAGTCGTGTTATAGATAATGTATAttgctgcaaaataaata

Function


GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU98171 lncRNA upstream 17360 23405008 ~ 23405312 (+) False LOC122350936
XR_006251646.1 lncRNA upstream 182860 23231564 ~ 23239812 (+) True LOC122350913
TU98170 lncRNA upstream 184419 23237977 ~ 23238253 (+) True G66344
XR_006251648.1 lncRNA upstream 191648 23230043 ~ 23231024 (+) True LOC122350915
TU98064 lncRNA upstream 435714 22984040 ~ 22986958 (+) False mfn2
TU98176 lncRNA downstream 9147 23432809 ~ 23433745 (+) True G66350
TU98180 lncRNA downstream 10456 23434118 ~ 23435033 (+) True G66351
TU98273 lncRNA downstream 191554 23615216 ~ 23616682 (+) True G66416
TU98278 lncRNA downstream 197265 23620927 ~ 23623471 (+) True G66418
XR_006251574.1 lncRNA downstream 252772 23676434 ~ 23681832 (+) True LOC122350145
XM_043247710.1 mRNA upstream 12111 23403713 ~ 23410561 (+) True LOC122350936
XM_043247681.1 mRNA upstream 21110 23054616 ~ 23401562 (+) True prdm16
XM_043247463.1 mRNA upstream 435510 22973995 ~ 22987162 (+) True mfn2
XM_043247808.1 mRNA upstream 453699 22956869 ~ 22968973 (+) True plod1a
XM_043246224.1 mRNA upstream 476518 22944210 ~ 22946154 (+) True LOC122350040
XM_043246370.1 mRNA downstream 2246 23425908 ~ 23427204 (+) True nppb
XM_043246265.1 mRNA downstream 5253 23428915 ~ 23430926 (+) True nppa
XM_043247716.1 mRNA downstream 23529 23447191 ~ 23456783 (+) True mthfr
XM_043246658.1 mRNA downstream 59233 23482895 ~ 23579462 (+) False plch2a
XM_043246655.1 mRNA downstream 59234 23482896 ~ 23583377 (+) False plch2a
TU98168 other upstream 270725 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 437088 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1301876 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1304838 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1458114 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 208721 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 328906 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 329799 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 329799 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 332029 23755691 ~ 23783631 (+) False acot7

Expression Profile