RNA id: XM_043247587.1


Basic Information

Item Value
RNA id XM_043247587.1
length 2596
RNA type mRNA
GC content 0.49
exon number 1
gene id foxb2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20010422 ~ 20013017 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGACTAAACGCACATGAAGTCAGACCCTTCCCCTATTTACCCCTTATTCGTCCTAAAGTCAGTGTCATCATAATAAAAACGCGACTAGCGGGGGGTCTGGACCTCTGCCATTCTTACAAAAGCGTCGCGGATCCTCGGCGAGTGGAAGCCGAGCGCGCGCGTCCTCCGAGAGAACTTCCCGCGCTCTGAGAGGAGTAACGTCAGACAGGTAACTTTCAAACCGTCCCGTTGTCTCTTTTGCGTACTTGTGGATTTTGAACTTTGCGCGTATTCGCGAACCAGCTTTAAACGCGTCAAACAAACGGTTGAAGTCAATCAAAAATAGGCTGCTGAATGACTTTTTTATGTCAACGGACGATATGCTGGCTTGCTTCTGACTGATCCCCAAGAGATTTTCAAAAATGCCTCGGCCGGGCAAGAACTCGTACAGCGACCAGAAACCTCCGTACTCGTACATCTCTCTGACCGCCATGGCCATTCAAAGCTCCTCCGAGAAGATGCTCCCCCTCAGCGACATCTACAAATTCATCATGGACCGCTTCCCGTATTACCGCGAGAACACTCAGCGCTGGCAGAACTCGCTCCGCCACAACCTTTCCTTCAACGACTGCTTCATCAAGATCCCCCGGCGGCCCGACCAGCCGGGAAAGGGCAGCTTCTGGGCCCTGCACCCGGACTGTGGAGACATGTTCGAGAACGGCAGCTTCCTGCGCCGCCGCAAGCGCTTCAAACTCCTCCGGGTGGAGCATTCGGCATGCAAGAGCGGCCCCGTGCTGCACTCCTACCACTCTCACGCCCAGCATGCCTTGCACCAATCCCACCACCACTCGGGCAAGCTGGGCGTGGGACACCCGGAGTACCTGGGCACCGTGGGGCGGCTCTCGCACTTCCAGAGCTACACGCTTGGCGGCGGACAGAGCGGCAGCTTCAAGCACCCGTTCGCCATCGAGAGCCTGATTGGAAGAGACTACAAAGGGGTGATGGCCAGCGGGTTGCCCATCGCCTCGGTCATGCATCACCTGGGGTATCCGGTGCCCGCTCAACTGGGCAGCATGGTCAACTCGGTGTGGCCCCACGTGGGCATGCTGTCTGAGCCGGTGTCTTCAGAATACCCTCCCTTCAATGTGGCGGTCAAGGGGCTGTACCATCATCACCCGGGAGCCCAAAGCATGCCCGCCGTGCCCGTGCCCATCAAGCCAACGCCGACCCTGGGCGCAGTCCCGTCTTTGACTGGCATGACGCCGGGAGTAACGCAGCTGTGCCCGAGAACGGCGGCGCTGATGGAGAGAGACGCGACAGCTCTCGTCGAGGAGAAAAGCGGCTCTCTCCATCCCGCTCTCCTTCAGTCCTGAACCAAACGCTGAAGAGTCAGACACGAGGGTACGTAGAGCATGCTTTGGGGATGGCTGTGGACCGATTCGGGATGCCAGCCTTTTTCGGGAAGACGCTTTGAGAACTGTGCGTCACTCTCAAGCAGATTGTCAGAATCGGCTCTGGTTTCTGCTTTATGGTACGTGCACGTGTTTTagctcctttaaaaaaaaaaaaacctgtactGTACAAAGGACTGGAAAAAGAACAACGCTGATGTACATTTTGTATACCCTTAAACACGAAGCCTTACGAACGCTACACGGACTGTgtgtaatgaattaaaaaaaacacttcttgcATGCTTGTGTGCCGCTGTCGAAGCGGTGGATCGCTGTGGGTCCGGGAGAGAGTCATGAAATAACCCAAAGTGaattttttgctaaatttattGTATTCATGTAAGATAGAAAATACCTTTATGTTAAAACGCTGTTATATATCATCACCATAAATGTTATACTTGTAAATAGGTGTACAATATCATCACTTACAGCGTTTGAATTGCACTTGTGGTATCTACTAACACAACgttgaaatattttatgaagATGAAACGATCAAACGGGCAATTATAGGGAATAAAAGCAGGCCTGGTTTACGTGTGCTGTTTTAAAGTAGCATGTGAGTTTCAAAAAAAGAGCAGTATAATTGTATgagatttgtaaattaaatatttttagagtaaattcagtttttgtgCAGTGCaacgtctttctttctttttctcaccgGTTTGTTCCTTTTTGTTTATACCGGAGTAAACATTACAACTGTTAGGTTTCTCAGCTGAATTTGCTCTAGTGAAATCAAAAgcatttatatgcatgtaaaatgaCCAGCGTTAATGAGCAGAAAATCTTGAAAACGTACTTAAATAAAAAGACTAttttatgtaatgcaaaataaaatttgtatgaTTAGGAAATAGTGGTTAAATAATCTTTCCGTTGTGCTTTCACTGAATGTTCTTCTCGCTCGATCCTTTCATTTGGATCTGTTTCCTAACAGTCGGTGGCTGAACGTCACGAGCGTAAATAGCTTGATAGTAATGGTTTTCGCTTCTTCACCATTTTTGAACATTAAGACAATTGTTGCTCCGAGGCACAAACACGAAAGACTGAGTCTATTTGCCAAACTACAGAAAACATGGCGCTGTCCAGCAGAGGAGCACTGACCTAATAATCCAGCCCCTTGATGAGTGCTGCTTTATTAGTTTAATGCT

Function

GO: NA

KEGG:

id description
K09411 FOXX; forkhead box protein, other

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251540.1 lncRNA downstream 265772 19708097 ~ 19744650 (-) True LOC122349935
TU96510 lncRNA downstream 577287 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96496 lncRNA downstream 601382 19406755 ~ 19409040 (-) True G65244
TU96432 lncRNA downstream 742232 19100929 ~ 19268190 (-) True G65201
TU96988 lncRNA upstream 90320 20103337 ~ 20104000 (-) True G65596
TU96994 lncRNA upstream 104990 20118007 ~ 20121778 (-) False zgc:154046
TU97000 lncRNA upstream 123586 20136603 ~ 20139364 (-) True LOC122350956
XR_006251659.1 lncRNA upstream 124178 20137195 ~ 20139985 (-) False LOC122350956
TU97001 lncRNA upstream 125099 20138116 ~ 20140200 (-) False LOC122350956
XM_043247266.1 mRNA downstream 8309 19980784 ~ 20002113 (-) True LOC122350616
XM_043246889.1 mRNA downstream 32851 19957057 ~ 19977571 (-) True inpp5l
XM_043246008.1 mRNA downstream 60300 19942409 ~ 19950122 (-) True LOC122349884
XM_043246007.1 mRNA downstream 63360 19942409 ~ 19947062 (-) False LOC122349884
XM_043246357.1 mRNA downstream 70805 19934426 ~ 19939617 (-) True LOC122350116
XM_043246011.1 mRNA upstream 22358 20035375 ~ 20080535 (-) True pcsk5b
XM_043246013.1 mRNA upstream 36934 20049951 ~ 20080513 (-) False pcsk5b
XM_043246012.1 mRNA upstream 36934 20049951 ~ 20080512 (-) False pcsk5b
XM_043247127.1 mRNA upstream 71319 20084336 ~ 20099630 (-) True ubap2b
XM_043247130.1 mRNA upstream 71319 20084336 ~ 20099589 (-) False ubap2b
TU96506 other downstream 577287 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 577287 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 808045 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 970871 19030987 ~ 19039551 (-) False LOC122350102
TU96164 other downstream 1450088 18559667 ~ 18560334 (-) True G65033
XR_006251697.1 other upstream 440014 20453031 ~ 20453131 (-) True LOC122351134
TU97752 other upstream 1758451 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1771687 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 2000956 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 2015715 22028732 ~ 22031993 (-) True G66116

Expression Profile