RNA id: XM_043247630.1


Basic Information

Item Value
RNA id XM_043247630.1
length 4086
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC122350867
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 7594983 ~ 7652306 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAATAAGTTTGCGTTTGTTTCTATACTGCTTTACGCACGCGGTTTTTTTGCCCTCCTGAGGAATTCGCGCGCTCACGCTggcacacattttaaaagtcagCTATCATACCTGTGCTGCGACTTGTCTGTGAACGTCTCAGCCTCTCTACTTGTTTACAGAATgtgtcatctttatttataagtTTAAGTTACGTAATCTATCAGAGAATTCAAACGAGGGAACTGTTTGGGGCTAGAACGACCGAAGAAAATCATTCTCAACAACATGACGCGGCGCGCGTGGAGCGCAGATCTGTCGACGCAGCATCCCGCCGAGCATTCCAGCGAAAGCGCGTTCAGGCGCGCAGTAATCGCATCCTTGCGGGATTTGTCACCAGTCGCCAGTCAGCATCATTCAGCTTTCTTCAGAGGGAAACGCGGTAACAGCAGGGACAGTTCGTGCAGAACGAGTGTTTGACTCCTGAGCGTCTGCTCTCTGGGGGGGAGTTGGTTCATTTGGGCTAAAGAACATCGCTTAACTTACTGAAGTAAAAACGCTCGCGCGACCTTCAAGccttCCATACGGAGGGATTCTTGAAGCAGCATTTGAATACATTTCCATTATGAAGCACATGTCCATCTCGAAATGGCTAAGTCAGCTGGGGCTACCTCAGTACTGCACGCTATTTGATGAAGAATATGATGGAGTGGAGGACTTGTTGCACCTTACAGAGATTGATCTGTTGGGTATGGGGGTCCAAAGTCGTCTCCATCGCATCCACATTCTCTCCAGTATCCAAGTGCTGCGAGAGCGTGAAACAAAAAGAGagCTGAGGATGATGGCAGAAGGGAGGTTTTCTAGTCTTCCCAGGAACATGCACGTTGGGCGCCAGTGTCCACTTGCATCTTCTATGGATCTGCTGAGCTCACGGCCTGCCATGGCTGAGATGCCGGTCAGCAGCTACCAGGGTGTCTCCATCCATGGTACCCTGCCTCGCAAGAAGAAGAATGGCACTGGTTCCTCTGTGAAGCAGTGGGAGACGAATGGAAATATGGGGTCATCGGTAGCACAATATCGGCGATATCGTCTGCCACCATCACCGCTCATACACAACATTATCGAAGAACACCAGGCTTTCCACTCAGACAGGAAGAGCAGTGCCTCATCTAGGGACGGTGCAGGCATGGACCCTACCATGGAGTATGTCAAGTTTTCGAGGGACAAGTACATCATGGAGGGACCCCCGGAAAAGCTTCGGAGGGAACTAGAAGAAGAACTGAAACTGAGCAGCGAGGAACCAAGAAGCCATGCCTGGTATCACGGAGCCATCCCTAGACAGGTGGCTGAAAACCTGGTTCAGAGAGATGGAGACTTTCTGATCAGAGACTCGCTGTCCAGCCCAGGAAACTACGTTCTGACCTGCCAGTGGAAGAACACCCCTCAACACTTCAAAATTAACAAACGCGTGGTAGCTATGAACGAGGCCTACTCGCGTGTTCAGTATCTGTTTGAGAAGGAGGGCTTTGACAGCGTCCCCGCGTTGGTGCGATACTACGTAGGCAACCGTGAGCCGGTATCTGAGATTGTCGGAGCGATTATCTTTCAGCCAATCAACAGAGCTCTGCCTCTGAGATGCCTGGAGGAGAAATATGGAGTTGGATCTATACGTGTAGAGGCGGGATATTCGGAGAGAAAGAGCCTGACATCTAAACGGTTGAGTCTAAATATCATGAACGGACACACCCAGGATCACACCCTCAGCCGTGGGAATCTCCTCAGCAACAAAGATAAGTGTGGAAGTCAACCAGCATGTCTAAACCACGTTCAGGAGAGGAGACGGCCACTGAAGACCCATCAGTCGGAGAGCTTTCTCCCTATCGGCTGTAGGCCCCAGGCTCAGGTTCAGCATATGGAGCACCAGCCGTGCCCCAAATCTCCAGTTTTCCGCACAGGAAGTGAGCCAGCTCTGAGCCCCACGGTGCCACGGAGAATGGCCTTTGATACCCAGCCTGGCGAGGCTATTCGTGGATCCGACAGCCAGCTTTGTCCCAAACCGCCCCCTAAACCCAGCAAGGTGCCTTCTATGAGAGTACCCTGCACCCCTGGCCTGAAGACCCTCTCCCCACCAGTCCCTCCAGTAAAGCCCTACAAACAGCGACTTTCACCCCAGCTACAGCAGCAGTTGGGTAACCCATCGAGTCCAGAGCTAAACTACTGCGAACTGAGTCCATGCAGCCCCGCTGACTGGGAAAAGATGACTAGCTTACAAGCTAATGGCTATGTGGAGAGGCTAAAGACTGAGGAGGAGTTAAGGAGATGTGATAGTAGCACCAAACTTGATCGTAGCTCCTATCACAACGCCATTGAAGCCCTTGACAATGACAGTGAGGAAGACAACGTGGAGGATGTGGATAAAGAACAGGACTGCAAGAAAGGTTTCAAAAGACCCGTGTTTGAAACCGAATCGGCCTTCAAACCTGGTGACATCAGCTTCCGGCTTCTACCAGCGGAGAACAAGCCACTGGAGATGACGGTGCTGAAGAAAGCCAAAGAGCTGCTCGTCATTCAGGATCCAAAGACCATCGCCAAACACATCTTACAAGCAGACTGTCAGGTTGCCAGGATACTAAATGTTTCTGAAGAGGCGAAAGGTCAAATGGGTGTGACCTCCGGGCTGGAGCTGGTGACCCTTCCTCATGGGAGACAGCTGCGGCAGGACCTCATGGAAAGGCATAACACTATGGCGATTGGAGTTGCTGTGGATATCCTGGGGTGTACAGGAAGTCTGGAGGAAAGAGCAGCCACCCTAAACCGAATCATTCTTGTAGCTCTGGAGCTGAAAGACTCCATGGGAGATCTTTATGCCTTTTCCTCCATAATGAAAGCACTGGACATGCCTCAGATTACAAGGCTGGATCATACGTGGACTAGCTTGCGAagaaaatacacacagactGCCATTATTTACGAAAAATCTTTGAAACCGTTCTACAAAGGACTCTATGAAGGAAGTGCTGAAATCCCACTGAGCAATGCCAGTGTTCCGCTGCTAATACCGCTGCTCACCTTGATGGAGAGGCCTGCGGTCACCTTTGAAGGTATGGACGTCTGGGAGAACAACGACCAAGGTTGTGAAATCATGTTCCGGCACCTGGAAGGAGCTCGTGCCGTGGCACGCAATGCGGAAACATACACCTGCAATGCACAACGGATCCTCCAGGGATTCCAACCTAATGATGACATGCTGGAGATGTTAAGGACTGATTTTCAGTTGCGTCTGCTCTGGGGCAGCAGGGGGGCGGCCGTGGACCAGACGGAGCGATACGAAAAATTCAAACTCATCCTTACGGCCCTGTCCAGAAAACTGGAGCCTCCAGTCAAACACACAGAACTCTGAAAAACCAGacactttatatacatattagacTCTCTGAACCTCTCTGTGGAGTCAGGTCTGTAGCAGAGTCAAAGGTCATCTGCATCTGAAAAAGGACGTTCTCTGCCAGAACGTGAGCTTCAATAGATCACTTGCAGATTGCGAGTTTAAATCATTCATGAGCAAAAATGGCACTTGTCTGTTGAGAGCTACTTTGTTTCCAAATGCATCTTCCAGAGGTGTGCTGTGCTTATTAAACGAGCAGGTACCGGTTTTgacttcaagaaaaaaaaaaaggaagggtACATAGAACATTTACAGTTTTCAAGACATCATCCACCGAATGAAATGCGTACAATGCTGGAAGCAGAGAGAACGCTTTATGAGAGATCTATGGATGTGCTTAATCATTTGACACATGAAGTTACTGAAGAGATGACTGAGATGATGGACTACACCTTCAAGACTAATTTGCAGCTCTATGAAGGAACACGAGGTAGTAGAGTTTGTACACTTAGAAATACCATAGAGGCAGCTCGTCAAAGCAGTGCCGTTGAGTTTTAAAAATCCCACATGAAAAAAAGATGTACATAATCATCACTAGTGTACGCATGTGAAGGCTAGtttgtgtaatatattgtattaagtATTATGACCTGTAAATAGTCACCCATAAAtgaaatattctgaaaatattgaataaatatctaataaaagCTTTGAATTGTTA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K23688 BCAR3, SH2D3B; breast cancer anti-estrogen resistance protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91596 lncRNA downstream 46660 7545810 ~ 7548323 (-) True G61868
XR_006251632.1 lncRNA downstream 200774 7390288 ~ 7394209 (-) True LOC122350888
XR_006251630.1 lncRNA downstream 216524 7377755 ~ 7378459 (-) True LOC122350886
TU91592 lncRNA downstream 286643 7306112 ~ 7308340 (-) True G61865
TU91585 lncRNA downstream 313818 7274590 ~ 7281165 (-) True G61860
TU91746 lncRNA upstream 9911 7662217 ~ 7663259 (-) True G61959
TU91765 lncRNA upstream 97397 7749703 ~ 7778564 (-) True G61965
TU91770 lncRNA upstream 227111 7879417 ~ 7974020 (-) True G61967
XR_006251635.1 lncRNA upstream 299255 7951561 ~ 7954642 (-) True LOC122350891
TU91781 lncRNA upstream 557737 8210043 ~ 8217417 (-) True LOC122350139
XM_043247652.1 mRNA downstream 212171 7380546 ~ 7382812 (-) True LOC122350884
XM_043247357.1 mRNA downstream 217226 7375035 ~ 7377757 (-) True LOC122350680
XM_043247636.1 mRNA downstream 224528 7363235 ~ 7370455 (-) True LOC122350872
XM_043246336.1 mRNA downstream 426210 7137062 ~ 7168773 (-) False cep350
XM_043247642.1 mRNA upstream 25190 7677496 ~ 7687562 (-) True spata6
XM_043247648.1 mRNA upstream 36555 7688861 ~ 7740456 (-) True LOC122350881
XM_043247643.1 mRNA upstream 98109 7750415 ~ 7763209 (-) True bend5
XM_043247644.1 mRNA upstream 98109 7750415 ~ 7762298 (-) False bend5
XM_043247360.1 mRNA upstream 384316 8036622 ~ 8137275 (-) True agbl4
TU91479 other downstream 494051 7094898 ~ 7100932 (-) False lhx4
TU91442 other downstream 778259 6814488 ~ 6816724 (-) False LOC122350104
TU91179 other downstream 1152001 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 1669636 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1977319 5614329 ~ 5617664 (-) True G61513
XR_006251629.1 other upstream 26110 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 464702 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 740039 8392345 ~ 8416553 (-) False eps15
XR_006251692.1 other upstream 775309 8427615 ~ 8427687 (-) True LOC122351129
XR_006251691.1 other upstream 776519 8428825 ~ 8428904 (-) True LOC122351128

Expression Profile