RNA id: XM_043247676.1


Basic Information

Item Value
RNA id XM_043247676.1
length 2450
RNA type mRNA
GC content 0.44
exon number 7
gene id star
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20216745 ~ 20220879 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

atatacctgatTTTTCACTTGCCGCAAGTCTTTTAATTAAGAACTTTTCTCAGTTAATATTGATAAAGTAATTTGATTGTCATATGATGTAATTAAATCAGTTAAAGTTAGTATTTGATTACAGCTCTCGTTTGCACCTGTTCtagctttattttaacaacTAATGGCAGTAATTTCCACACTTCCTGACTGGAAGGTGGTCTGACAAAGGTTAAGGCCTGAGGTATAAATTACTCTGAGGGACACGGGGTTGTGGGTTAAGGCACTTTTACTCATAAAGCCGCTTTCCATTGCTTAAATGTTCTTGAGCGAGTTGATTTTACGTCAAGCTGAAAACCACGAGTCATTAAACCAATATTTTCATACAACCAGAAAAGTTTCCATTGGCGCCGAGGCCAAGGCTGTCACACTGGCCTCTTATTGTTGTCACTGATGGAGAATTGATTTGTTGCAGCTTTGATATGGGTTTACGTGGCACAGCTTGTAAGAAGATTTGACCTGGATTTTCAGGATACAGCTCTGTCAACCAACGTAAGGTCGAATGCTAACATTTGTACAATAAAGGTCCACtagtttcctcttttttttgcaCGTCACCAAGCAATGATGTAATTTTAACTCGACCTCTTGGAGTTatggtgatgatgatgctgGACAATCTTGGCTAGTGATTTGTCACATTGTAAACTTGACCTCCTGACCTAAAGCTGTAATGGAACCAGAAGAGAACGACATATGTGACATACTGAGAGTTTCTGGCTTATCGTATCCTAAAATATATCTGTAGATAAGTTTAGCTGCTCAGTACTGTTTGTTTTGactggaaaaagaaagaaagaaacgcAGGCAACTTGACTGTGCGAACCGGTGTTCTGTGTGGGTAGTCTTCAGGCACCGGCTGTTATCTGTAACAACGTGTTTAGATTGGTAGGCCGTCGTGTTCACTGCACATCCTTGACACACAGGGCCGCCCCTGTGCGTTGAGTGATGGTGCTGTTTTATCTGTGAGGTGACGAGAACACGGCCTTGTCTGACGGGCCTATAAAGAGGCAGAAGCAGCCAACTGTTCCTCAGATTCCTCTTCGCTCGCGCATTTCACGTGTAGTCGCTCATTCATCTGTTGAAAAGATACTTCAAATGTTGCCTGCAACGTTCAAACTGTGCGCTGGCATTTCCTACAGGCACATGAGAAACATGACAGGTCTGAGGAAGAACGCAATAATTGCGATCCATCATGAGCTGAACAAGCTTTCCGGACCTGGACCTAGTGCCTGGCTCAGCCACATCCGAAGAAGGAGCTCACTGCTCAgCAGTCGGATCCCAGAGGAGACGTACAATGAAGCCGAGCAGTGTTATGTGCAGCAGGGACAGCAAGCTCTGCAGAAGTCCATCAGCATCCTCAGTGACCAGGACGGCTGGCAAACTGAGATCGAGAGTGTCAATGGTGATAAGGTGATGAGTAAAGTATTACCAGACATTGGCAAGGTTTTTAAGTTAGAAGTGATGCTGGAACAGAAGACGGATGATCTGTATGAGGAGCTGGTGGATAACATGGAAAAAATGGGGGAGTGGAACCCAAATGTCAAACAGGTCAAGATTCTTCAGAAGATCGGTCAGGATACTATGATCACACACGAGGTTTCAGCTGAAACACCTGGGAATGTGGTGGGCCCTCGAGACTTTGTAAGTGTCCGCTGTGCCAAGCGGAGAGGATCTTCATGCTTCCTCGCCGGGATGTCCACTCAGCACCCCGGAATGCCTGAACAGAAAGGGTTTGTAAGGGCTGAGAACGGACCCACCTGTATTGTGATGCGACCAAGTGCAGAAGATCCCGATAAGACAAAATTTACCTGGCTGCTCAGTTTAGATCTTAAGGGTTGGATCCCAAAAACCGTCATCAACCGAGTACTTTCGCAAACCCAGGTGGATTTCGCAAACCATCTCAGGCACAGAATGGCATCCAGTGGTGGTGTGGAGGCAGCCGTTGCTTGCTAACATCTACCTTTATGGCCTAAAAGCAGATGCTGCAACTCTGTTCAGGGTCAAGATCGTCTCACCCAAAACCACCACAAcccatttcaataaataaatcacagagaTACAGAAGTTAAATTATCCATCAAAACAGTATGCTGCTCCTTGTACAGTACAGAACcgtaatttataaaaatggatCAAATGCTGGGTCACTGCAACGGAGATTTAATAAGTTTTGATTTCAGCCCGATAGTAAACTCAGTCTCCTTCCTCTGTCTCCTTCATTTTTGGGTTTGATCTTCCTTTATTTCCCTCATATACTTCTGCAGAACACCGCAGACTATTAACTACCGGGTTCATTAGTTCCTATTTTATcactgtttgtatttattttaagttaatattattattgcatcACCCTGGGAAAGGATGTCTTCTAAGCGAACAttcattaaaactattaaaatgaaaaa

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0006694 steroid biosynthetic process biological_process
GO:0030301 cholesterol transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0015485 cholesterol binding molecular_function

KEGG:

id description
K16931 STAR; steroidogenic acute regulatory protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97011 lncRNA downstream 50373 20166056 ~ 20166372 (-) True G65613
TU97001 lncRNA downstream 76545 20138116 ~ 20140200 (-) False LOC122350956
XR_006251659.1 lncRNA downstream 76760 20137195 ~ 20139985 (-) False LOC122350956
TU97000 lncRNA downstream 77381 20136603 ~ 20139364 (-) True LOC122350956
TU96994 lncRNA downstream 94967 20118007 ~ 20121778 (-) False zgc:154046
TU97028 lncRNA upstream 60703 20281582 ~ 20284840 (-) True LOC122350542
XR_006251606.1 lncRNA upstream 61290 20282169 ~ 20284191 (-) False LOC122350542
TU97029 lncRNA upstream 62651 20283530 ~ 20284840 (-) False LOC122350542
TU97065 lncRNA upstream 194186 20415065 ~ 20417862 (-) False LOC122350560
TU97066 lncRNA upstream 194186 20415065 ~ 20417862 (-) False LOC122350560
XM_043247674.1 mRNA downstream 267 20199656 ~ 20216478 (-) False elmod3
XM_043247671.1 mRNA downstream 1525 20199656 ~ 20215220 (-) False elmod3
XM_043247675.1 mRNA downstream 1645 20199656 ~ 20215100 (-) False elmod3
XM_043247673.1 mRNA downstream 1832 20199656 ~ 20214913 (-) False elmod3
XM_043247672.1 mRNA downstream 2169 20199656 ~ 20214576 (-) True elmod3
XM_043247670.1 mRNA upstream 1637 20222516 ~ 20265923 (-) False grk5l
XM_043247668.1 mRNA upstream 1637 20222516 ~ 20265923 (-) False grk5l
XM_043247669.1 mRNA upstream 1637 20222516 ~ 20265922 (-) True grk5l
XM_043247184.1 mRNA upstream 45964 20266843 ~ 20269416 (-) False lsm1
XM_043247185.1 mRNA upstream 45964 20266843 ~ 20268880 (-) True lsm1
TU96506 other downstream 783610 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 783610 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1014368 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1177194 19030987 ~ 19039551 (-) False LOC122350102
TU96164 other downstream 1656411 18559667 ~ 18560334 (-) True G65033
XR_006251697.1 other upstream 232152 20453031 ~ 20453131 (-) True LOC122351134
TU97752 other upstream 1550589 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1563825 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1793094 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1807853 22028732 ~ 22031993 (-) True G66116

Expression Profile