RNA id: XM_043247757.1


Basic Information

Item Value
RNA id XM_043247757.1
length 3274
RNA type mRNA
GC content 0.54
exon number 10
gene id LOC122350969
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 966169 ~ 980033 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gggcCGCGCGCGTGTCGTGGCCGCGCGCGCTGAGGAGGCTGAAGGAGGCGCGCGCTCGCGTCACATTCTTCAGATGATCCGTTAATAATCACCAGAAACACCGACAGACGATCAGCGGAGCGGCGACACACGGCAGCGGGAACGAgaaTGCTGACTGAAGATGGACGTTCCTGAATACCTGGATCTGGATGAGATTGACTTCACGGATGATTTACCTTACTCGTCCAAGAGTATTCCTGAGCTGTGCCGGAGACACGATGGAGCGGCCGACGAGAGACAAGttttGGTTTCAGCTCCGTCTATTAACTGGGCTCGCAGCGCGCTGTCCGGCGGAGCGGGAATCAAACCCACCGGCATCGCCGACGTCTACAGCAAGTTCCGTCCGGTCAAGCGCGTGTCTCCGCTCAAACACCAGCCGCAGGAGTCTGACCCCGAGACCGAGGCCAAGAGCGCCGAGGCCGGTAAGAGCCGAGGCCTGCCGCTGCTGGGAGAGCTGGAGCACTACGACCTGGACATGGACGAGATCCTGGACGTGCCCTACATCAAGTCCGAGAAGAGGAGCGCGGCCGCGGTGAAAGACAGCCTCCTGTCGCCCGTCAGCTGGCCCGACGTCAGGAAGCCCCGGCCGGATCAGGACGGGCTCCGGGCCCCGGGTGCTCACGGGTCAGAGCCGGACGCTCTTCTCTCCGACAAAGCCGACGGCGGCCCGAGCGCCTTCCCTCTCCCGCCGAGGCAGGACAAGCCCTGGAGGACGTTTGGAGAAGCGGACGAGGAAAGCAAGAAGACCCAGAACATCCTGAACATCGTGAGAGAAGGACAGATCTCGCTGCTGCCTCACTTCGCGGCGGAGAACCTGGAGCTCATCCGAGACGAGGACGGGAACAACCTGCTCCATGTGTCTGCGGCTCAGGGTCACACCGACTGCCTGCAGCACCTCACCTCGCTAATGGGCGAGGACTGCCTTAACGAACGCAACACACAGCAGCTGACGCCCGCCGGCCTCGCCGTCAggaatggTCATCTGGAGTGTGTGCGCTGGATGGTGAGTGAAACCGAAGCCATCGCCGAGCTCAGCTGTACTCGTGAACATCCCAGCCTCATCCACTACGCCGCGAGACACGGAcagGAGCGGGTGCTGCTGTGGCTGCTTCAGTTCATGCAGGAGCAGGGCATCTCTCTGGACGAGGCGGATCAGAACGGGAACACAGCGGTTCATGTGGCGGCTCAGTTCGGACATCTCAGCTGTGTTCAGACTCTGGTGGAGTACGGCTCAAACGTGACGGTGCAGAACCAGCAGGGCGAGCGTCCGTCCCAGAGTGCCGAGCGGCAGGGTCACAGCACCTGCTCCAGGTATCTGGTGGTGGTGGAGACCTGCATGTCTCTGGCCTCGCAGGTGGTCAAACTGACCAAACAACTGCACGAACAAACGACGGCGCGAGTCGCTCTTCAGAATCAGCTTCATCTGCTGCTGCAGACTCACGAGCTGAACGGCAGACCGCCCTCACCCAGCTCTCACGTCGAGTCGTGGCCGGAGATGATCTTGTCGGCCGAAGCGGCTCCTGATAACGGTCAGTGGACGCTGAAGCAGAGACACATGGACTCGGACGCCGGCCAGCGCAAGCTTCTGGGGGAGGCGGGGCCTGCAGCCGGACCAATGAGACGGCTGGGGCCAGGCGAGAGGCGGGAACTCAAGCTGGCTCGTCTCAAGCAGATCATGCAGCGCTCTCTCAGCGAATCAGACGCAGAAGAGTCCAAAGCGCCCGGCCCCGAGCGGCCCACGCAGCTGTCCATCGCGGAGCCCGACGAGAACAAGCACAAGTTCTCCTTAACCCACAGAACTTCCAAACCCGCGGACGCCTGCAACCCGTCTCCGTCGTCTGACCACAGCGACCCGGAAACCAAGAGCGAAGAGCTTCCCGACGGCCAGAAGCTCACCACCAGTCCCAAGAGCGCCCTCAAGTCCCCGTCGTCTCGCAGGAAGACCTCGCAGAACCTCAAGCTGAGGGTGACGTTTGACGAGCCGCCGCGGAAAGACGGACCGGCGCCGGACGCCAAAGCCCCGTCCGGGAAAGACAAGCCGGAGTCCGGCAAACGAGCGTTCGGGACGTTCCGCTCCATCATGGAGACCCTGAGCGGGAACCagaacagcaacaacaacaacgctCCGAGCGCCAAGAAGAGCGAGTCCAAGAGCAGAAACAAGACGAGCGCCGTTTAAAGCGGCTCCGAGACCCGTCTCGTTTCTGACGTCAGTGTCTAAACGTTCTCCGACTGGActcaaaaaaatgcttttctggCTCGTTTTCAGCCTAAATGtcttcttaaatcaagaaggagtGAAAACGTGgtcttgttttcagagaaaCCGGTTCTTGCTGTTTTCTGGCAGATGATTCAGCTTGCTCGaagcaaacattttattctgaaaacaagacctgaatccttctttcttttaagaaTTTCGAGACGTTTTGTCTGGAAACAAGACGAAAAAATCTAAGctagaaaagtgttttttgcagtgtatagagatattaaaagtagttttcaaatgttgttagtttttgcttaataaaagcagaaatatcTGCCAGTGGGGCAAGAAAACTAATCCAGTTATTATCACCCCGCTGAGAGAGGTTTTTCTCCTTTGTATTAATTGAAAACGATGCTCAGTATATTTGGACTCGTCGAGTGAATTCATCTCCACTCgagaatgtttagatatttctGCTGGAAAACGAGATGAAGGTCTTTATTTGCTGTGTACATGagaacacactttcacacatgTGCCGTTTTGCAAATACTGTGATTTCTGTACAGACTCGCTGATCGAAACCAAGCACGgacgaacgaacgaacgaatcACGTTCATCACGAAACGATTCAGTGCACAGAGCTCTTGAAGAATCCACCTTCAGTTTTCGTAACTCTAATACGTTTATATGTAACCTgtcttgttttttgttaaagTATGGGTTTATAATTTAACTGTTACGTTTGAACGCAAGAAACGCGGTATTATTGGAATCATTGTAACGACGTTTGgccattttttcaaataaagacGTTTCCAGCTGAGCTCAGTGTTACACGAGGGACGAAATGTTCAGAATTATGAAAATAGATGCAAGCCTGAAAAATCCACTTTTAACCTCGAGCGGAAAGTTTGTGATCCATGCcgttaaatgtcaaaaatgaatCTTGTTTTGTGAACCTCCTTAAACGAGAAGATTCGCCGCGAATAAAATCATTCtcttgttttctagta

Function

GO: NA

KEGG:

id description
K04558 SNCAIP; synphilin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251688.1 lncRNA downstream 19830 924448 ~ 946339 (-) False LOC122351117
XR_006251687.1 lncRNA downstream 19830 929701 ~ 946339 (-) True LOC122351117
TU88919 lncRNA downstream 89300 875959 ~ 876869 (-) True G60112
TU88879 lncRNA downstream 114010 845419 ~ 852159 (-) True G60080
TU88887 lncRNA downstream 131038 832727 ~ 835131 (-) True G60085
TU88929 lncRNA upstream 31334 1011367 ~ 1011818 (-) True G60118
TU88950 lncRNA upstream 81060 1061093 ~ 1062238 (-) True G60131
TU88952 lncRNA upstream 84364 1064397 ~ 1065200 (-) True G60133
TU88973 lncRNA upstream 140895 1120928 ~ 1122233 (-) True G60153
TU88974 lncRNA upstream 204275 1184308 ~ 1184649 (-) True G60154
XM_043247406.1 mRNA downstream 4795 947899 ~ 961374 (-) False snx2
XM_043247404.1 mRNA downstream 4801 947899 ~ 961368 (-) True snx2
XM_043247405.1 mRNA downstream 4807 947899 ~ 961362 (-) False snx2
XM_043246380.1 mRNA downstream 51794 885192 ~ 914375 (-) True prdm6
XM_043246379.1 mRNA downstream 51795 885192 ~ 914374 (-) False prdm6
XM_043247505.1 mRNA upstream 1601 981634 ~ 988560 (-) True LOC122350790
XM_043247206.1 mRNA upstream 18615 998648 ~ 1004413 (-) True prr16
XM_043247203.1 mRNA upstream 36857 1016890 ~ 1057927 (-) False dmxl1
XM_043247200.1 mRNA upstream 36857 1016890 ~ 1057927 (-) False dmxl1
XM_043247202.1 mRNA upstream 36857 1016890 ~ 1057927 (-) False dmxl1
TU88852 other downstream 234549 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 395196 565886 ~ 570973 (-) True ccl27a
TU88902 other upstream 155368 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 160665 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 371877 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 596772 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 596772 1576805 ~ 1580616 (-) False G60220

Expression Profile