RNA id: XM_043247776.1


Basic Information

Item Value
RNA id XM_043247776.1
length 3646
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC122350978
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23871236 ~ 23900075 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTCCCATCATCTGATGCTcattcatcctcctcctccagcaAGACCTCAATGAGACGCCGCGATAACGGACAACCATTGTTGTTTCATCGCTCTCCTCCATGAATTCATCTTCTGTTCACCTCTGGATGCGTAAATGGTGGTCTTTCTTCCACGATTACTGCTACATTTAGCCATATTGTTTCCGTTTCAGAAGCGTTGTTCTCGTGTTTGGAATAAAATAGCTCACAAACCGAAACTGAGGAAATAAGGGTTAACAATGAAGcagaaatacatttgaatttggAGATATCGACGGATATCTACAAAAAGGATTATTACTGCAATGGACTGGCTCTCAGCTCATGTGCTCCTCTTCTGCCCGAGTCCACTGCCCCCTCACGCTGCTGTGCCCCTTGCCCCATCCTCTCAGCACATCTGGAGGAAGGACTGCCCGTCCCTGTAGGAATGCCTGTTCGGGCCTGGCACCTGCCTCTGCCCGCGGCTAATCCCACACCTTTTGCCATTCCACCCCCCTCCAGCTCTCGCAGGCTGCTCCATCATGAACGATGAGGTCATCAGCACTAACGCACTGGCCTGGCTGGTCTGTTCGGGAGTGTCCATCCTGGCCAACGCCTGGGGAATCCTGAGCGTGAGCGCCAAGCAGAAGAAGTGGAAGCCTCTGGAATTCCTCATCTGCACCCTGGCTGGCACACACATCCTCAACATGGGCATCCCTATCACCATGTACTGCGTCATTCAGCTGCGGCGACAGCATTCCAACTATGAATGGAATGAAGGGCTCTGCAAGGTGTTTGTCTCCACCTTCTACACCCTTACTCTGGTCACCTGCTTCTCTGTCACCTCCCTGTCCTACCACCGCATGTGGATGGTCCGCTGGCCTGTCAACTATAGGTTGAGTAACACCAAAAAGCAGGCTGTCCATACGGTCATGGGCATCTGGATGGTGTCATTTATTCTGTCCACCTTGCCCGCTGTGGGCTGGCACGACACCACAGAGCGCTTTTACACCCACGACAACTGTCGCTTCATTGTGACCGAAATCGGCTTGGGATTCGGGGTCTGCTTCCTGCTTCTGATCAGCGGGAGTGTGGTGATGGGCGTCATCTGTATTGGAATTGCCCTCTTTCAAACCTTTTCCATCCAGATGGGTCAAAATGTGGACAAGAACAAATTTAACGTGCCCACCATTGTAGTGGAGGATGCCCAGGGCAAGAGGCGTTCATCCATCGACGGTTCAGAGCCCATTAAGACGTCGCTGCAGATCACCTATCTGATCAGTGGAATAGTCTTCATATATGACTTTCTGACTGGATTCCCCATATTGGTGGTGAGCTTTGCCAGCCTGAAATTTGACCGTTCCTACAGCTGGATGGTCCTGTGTGTCCTCTGGTGCTCCATAGCACAATCAATCCTGCTCCCCATGTTCCTGTGGGCTTGTGACCGCTACAGAGCAGATGTCAAGATGGTCTGGGAAAAATGTGTGGCCATCATGTCCAATGATGAAGTGGACGAAGATGGTTTGCCTTGTGTAACTCAACTCAGTTTTCTCAGAACAATGTGGAATGTGCCCCCTACAAGAAGATACTCCCACGACGAAACCGACATGTGGACCACCGGTCAGATCCCGTCTTATCTGCATCGCTGGGGATCCACAGAGGACATCATTGGCATCCCGCAATACAGCTCGCCACGCCACGAGAGACGTCGGAGCAGCCCGGCATCCTACCACGAGGAGAGCCACCCACACCGCAAACGGAGGCGATCCGAGGACATGCATTCGCTCAAGCAGATTCCACGAGTCGAGCGTTATGAGGAAGATTTCAAGTGCTTTAGCCGCGATGAAGTGATTAACTTTATTGACGAGACACCACTGGCTAGTCCAATGAGGAGCCCACGACGAGCCTCCACCATCTCTCTGGTTCCAGAGACCTTCGAACAGCACGTTGTTTTGTTGCCCCATTTCCCACTCACACACTTTGAGCGCGAGCCTCAAGCATTGAGACGCTGTTCTGAGCACGGCAGAGGACCCACACCATGCGAGTTCCCTCAGGATCTGCAGAGAAAGGCAAGGGACGGTAGTGTTGGGGAAAGCTCGAGCCTCAAGGCATGCCCTGAGCACAAGCGTTCATCAGAGATTGTTCTGTTAGGAGCAGGTGCACGGACAGCGGAGCAGTCTTCTTCAAGTATTAGGACAGGACAGGTAGATGCATCTGCTTGGGTGGACCAGAAGCACCTGCCTAAAGGGGAAAGCAAAGGAAGCACAAATAGTTTTATAAGCTCACAATCTGCATCGTCAGGCTATATGACATCCTTAGGATCCACAAactaaataacagttttatgaGCATTTTCAAGTAGTATGCTTATTAGTGTTAAAGCTTTGACTAAGTGgaatgtttttgttaacaaGGAACTGAGATTTTTGAAGTGTAATGGAAATGGCATAAAgacatcattgtttttttattattattattttatttatttatttttttatgggtTGCTGATACCAGGCTTGATTTACGGGGTCAGTGGGCCTCCAAGGCAAATAAGTGTCCTGATCTCAACACTTTGAAATGAGCACTAGGCCTTTTGCTCATACACATGAGCTTTTAACTAATGCccagttttcagcttttatattTCAGTGAGAATTTAGGATTCTGGTCAAAATACTGCCACAATTACTttgtgtagatatatatatgtgtctacacaatttatttttctatagtAGAGCTGGGAGTTCAAAAATACTTAAACTTCTAACatacttttatgtttaaatatgtcttttatgtttaatattagccaaacaaattatattttttgtttttggccaAATTGCCCTTGCCTCATAGTATAGAGGAAGATGTAGCAATATATGGGGCTGAGGGGATAGAAATTTGACAGAACAGTTTGTTTTGCagatttctcatttattttaaaccctttgtttaataaaatcacaaagtTCAATTTGGCTGTTGAAAAGATTAGCAGTAAAATTGAAGTAAGTTATATAGTGTTTCTTTACAACATTTTAGCTCACAGAGCTTTTAactctttaaatgtatttttgttgtttctggTGCTGtggcatgtttttaatatttttttaagtaaactgaAAAGTTATTTCGTTATATCGtttgaattcatatttttaaagcacaggGTTCTCTTTGTAGATCCAGACATGTctaaaatggctaaaatgtttcttttcacAGATATGTTTTAAACGAGTTTGTGTTAAGTGCTTTGTGATGATTGAAAATGTATATCTGATGCATTGTTATACTCATGATTACAGTCTTATTTGTCTGGTAGCCCGTAACAAAATATGATATGAAaagtaacattatttaaaaacacccaTAGCCTGCAGTCGACATGcacttttaacaaaataagTGACATAATCTTTTGTCATGTGGAGAATAGGACCTTTTGAAAGCTGGTGCAATTTAATTTGTTACAGTAGACATAACCACTGAATGGGAATTGGATATttgctgtattattttatgttgtatatGACCAGATTTTATACACGTATCCCGAGACAtcagctttttaaatgatttgttcttgttcatttatacatgtgtatatatataaaaaaatctgtgctTGCTGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251574.1 lncRNA upstream 189406 23676434 ~ 23681832 (+) True LOC122350145
TU98278 lncRNA upstream 247767 23620927 ~ 23623471 (+) True G66418
TU98273 lncRNA upstream 254556 23615216 ~ 23616682 (+) True G66416
TU98180 lncRNA upstream 436205 23434118 ~ 23435033 (+) True G66351
TU98176 lncRNA upstream 437493 23432809 ~ 23433745 (+) True G66350
XM_043246226.1 mRNA upstream 6323 23828666 ~ 23864915 (+) True LOC122350042
XM_043246225.1 mRNA upstream 67189 23752589 ~ 23804049 (+) True acot7
XM_043246878.1 mRNA upstream 118807 23750246 ~ 23752431 (+) True hes2.2
XM_043247984.1 mRNA upstream 130007 23740350 ~ 23741231 (+) True hes2.1
XM_043246392.1 mRNA upstream 206804 23658082 ~ 23664434 (+) False ybx1
XM_043247962.1 mRNA downstream 42686 23942761 ~ 23953590 (+) True LOC122351094
XM_043247101.1 mRNA downstream 55973 23956048 ~ 23963140 (+) False LOC122350539
XM_043247103.1 mRNA downstream 57835 23957910 ~ 23963140 (+) True LOC122350539
XM_043246765.1 mRNA downstream 67450 23967525 ~ 23972075 (+) True LOC122350362
XM_043247135.1 mRNA downstream 94862 23994937 ~ 24007734 (+) True qars1
TU98369 other upstream 87607 23752568 ~ 23783631 (+) False acot7
TU98363 other upstream 87607 23753461 ~ 23783631 (+) False acot7
TU98365 other upstream 87607 23753461 ~ 23783631 (+) False acot7
TU98371 other upstream 87607 23755691 ~ 23783631 (+) False acot7
TU98282 other upstream 237173 23632383 ~ 23634065 (+) False ndufa7

Expression Profile