RNA id: XM_043247785.1


Basic Information

Item Value
RNA id XM_043247785.1
length 960
RNA type mRNA
GC content 0.50
exon number 6
gene id ap3s1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1160400 ~ 1168457 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGCTGAGCTCGTTGACAGTTTCCGGCGCGCTCTTCCGCTCTGCTGTGCGCGTGAGTGTCAGATTGCGATTATTAGTTATTGATTATTGTAATAACAGTCTCTGACATCGACGAACTCAGCCGTAGCTGGATCCGACCACAGCGAAGGTGAACATGATAAAAGCCATTCTGATATTTAATAATCATGGCAAACCACGGCTATCAAAATTCTACGAGCATTacACCGAAgacacagagcagcagatcatCAGAGAAACCTTCCACCTGGTGTCCAAACGAGACGAGAACGTGTGCAACTTCCTGGAGGGAGGActGTTAATCGGCGGCTCAGATAACAAGCTGATCTACAGACACTACGCTACGCTGTACTTCGTGTTCTGCGTGGATTCGTCCGAGAGCGAGCTGGGCATTCTGGATCTGATCCAGGTGTTCGTGGAGACGCTGGATAAATGCTTCGAGAACGTCTGTGAGCTGGACCTGATCTTCCACATGGATAAGGTGCACAACATCCTAGCGGAGATGGTGATGGGCGGCATGGTGCTGGAGACCAACATGAGCGAGATCATCACGCAGGTGGAGGCACAGGGCAAGATGGAGAAGTCTGAGgCTGGGATCGCGGGGGCTCCGGCTCGTGCCGTGTCGGCCGTCAAGAACATGAACTTGCCAGAGATGCCCAAGAACATCAACATCGGGGACATCAGCATCAAAGTGCCAAACCTGCCGTCTTTTAAATAGTGACCGCTGCACAGAACTGTGAGACTGTGTTTACCTGAGTCCAGCTGATCTTGAGTTGCATCACAGACGAAGAAGGCACTGTGTGATGCTGTCTAtgaagtatttatttgattcttctgtcctctctcactctctctctctctctgtgtgtgtttaaatgtgtgtgtgtgtttcggtttgagtgtgtttgtgtgtgtgtgagagtgtttaaatgcgtgtgagtgtg

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030117 membrane coat cellular_component
GO:0008565 obsolete protein transporter activity molecular_function

KEGG:

id description
K12399 AP3S; AP-3 complex subunit sigma

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88973 lncRNA downstream 38167 1120928 ~ 1122233 (-) True G60153
TU88952 lncRNA downstream 95200 1064397 ~ 1065200 (-) True G60133
TU88950 lncRNA downstream 98162 1061093 ~ 1062238 (-) True G60131
TU88929 lncRNA downstream 148582 1011367 ~ 1011818 (-) True G60118
XR_006251687.1 lncRNA downstream 214061 929701 ~ 946339 (-) True LOC122351117
TU88974 lncRNA upstream 15851 1184308 ~ 1184649 (-) True G60154
TU88999 lncRNA upstream 45850 1214307 ~ 1218802 (-) True G60170
TU88997 lncRNA upstream 63619 1232076 ~ 1266809 (-) True G60169
TU88994 lncRNA upstream 96142 1264599 ~ 1266232 (-) True G60166
TU89017 lncRNA upstream 100341 1268798 ~ 1269384 (-) True G60187
XM_043248013.1 mRNA downstream 1114 1143871 ~ 1159286 (-) False commd10
XM_043247203.1 mRNA downstream 102473 1016890 ~ 1057927 (-) False dmxl1
XM_043246297.1 mRNA upstream 76377 1244834 ~ 1248364 (-) False LOC122350094
XM_043246296.1 mRNA upstream 76377 1244834 ~ 1248364 (-) False LOC122350094
XM_043246298.1 mRNA upstream 76377 1244834 ~ 1248364 (-) True LOC122350094
XM_043247081.1 mRNA upstream 81603 1250060 ~ 1252516 (-) False pym1
XM_043247080.1 mRNA upstream 81603 1250060 ~ 1252516 (-) True pym1
XR_006251689.1 other downstream 1154 1140698 ~ 1159246 (-) True commd10
TU88902 other downstream 22248 1135401 ~ 1138152 (-) True G60098
TU88852 other downstream 428780 727189 ~ 731620 (-) False LOC122349987
TU88755 other downstream 589427 565886 ~ 570973 (-) True ccl27a
TU89022 other upstream 183453 1351910 ~ 1356931 (-) False LOC122350266
TU89089 other upstream 408348 1576805 ~ 1578744 (-) True G60220
TU89090 other upstream 408348 1576805 ~ 1580616 (-) False G60220
TU89094 other upstream 433064 1601521 ~ 1605113 (-) False LOC122350657
TU89063 other upstream 564407 1732864 ~ 1787053 (-) False pi4kab

Expression Profile