RNA id: XM_043247796.1


Basic Information

Item Value
RNA id XM_043247796.1
length 2266
RNA type mRNA
GC content 0.42
exon number 12
gene id LOC122350989
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3800278 ~ 3807847 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaacgTATGCAATCTCAGAAGTGATACAGCTCGGAGCGGAAATGAACAATGATTttagattgtgttttattaacttcAAAACCTGCCCCTTACAGGaataactactactactactactaataataataataataataaaatagtagttATTGTTGTACAGCATTTGTCTCAAAATCGGTTTCTGCAGCTCTGTAgcgtttagctccaacttgatccagctaatcaagctcttcaggatcactagaaacttccaaaCAGGTATGATTTGGAGATAAGCTCTCCGGGAATTGTTGTACAGCATGTATTGATGTGCGCATGCTCAGTACAGAAGCGCCATACGTATCCCCtctagagtttttttttttttttaccggaCAACACTTCATGGCGTTTTAACGATATGTTAGAAATATAATCGTGGTAAATTAATTGTATACTAAACAATATAGATGCATCGTTTTGTGCATAATTTGCACgtcattaaataacattaaaagtcGTCTGAAGTAGGCTACAAAGCGATACTAGACggtatttataaaacaaacagtacTCCGAAATATACAAAAGGTACTGCGGTAAGTGTCCAAAAAAACgtaatagtttttataattcaaaatacTGTGATCAAGTTAACCCAGTTTTTTGTAGAAACGCCCAATCATCGTCTATTCAGCGCCGTCCAATAGCAGCAGCTCTCAGACAATACCGTAGGATAAACATTCCTAAACCATATATACTAGACTTAAAGCTGTAGGCATTAGAACTGTAGGCACTGCTCACCACTGACTTTAGGAGTCTAACCAACAACAAGAATCAGTTCTTCAGGATCTAAAAACCATGGCAGCCGCTCCTGCAACAAGTGTCCATGGACCTTCTGCTCCTCCCGCAAACATGTTCGATACAGTCCCCGGATACGAAGGAACCATAGCTGGCGGAGGCGGTGGGTATcttccacctccacctccatcTGTGCCGATGCCTGTGCCTGAACAGGCCCCCAGCTCACCAGACTGGCACATACCATCCATCTCAGAGGACCGAGCACGTGAATCTTTTGCAACATACGTCTCCAGCAAGTGCTGTTATAGTTCAGCCCCCGACAAAGAGGGAGTCATAACCAATATGGAGTCCTTTAATACCTACAGGTATCGTTTGGAGACGTTCACAGAATCCAGATCTACTGAATGGAGTCAGGAGCCTTACACAGGTCAGCCTGTGGATGCTGGTGTTCAGCCCGCTCCTGGTCCGTGGCAGATTGCAGCTCAGCCGCCAGCCTTCTTTAAAGAGCACAAGCAGACCATTAAAGTGCCCTATACTTCTTCGGTCAAGAACTGTCACTTGTGTCTGGGATTGGGAAGAAACCCCTGTACCACATGTGCTGGATCTGGAAACAAAGTCTGTTGGGTGTGTAATGGTTCTGGTCACCGTCAATCTGATGACCGCTGCATGCACTGCAATGGGCGAGGACGTGAAAACTGTAGTTCATGTAGTGGCCACGGCTCCTGCCAGTGTGACACCTGCCATGGAAAGAGACAGCTGCTCGTCTTCATCAACCTCATTATCAAATGGAGCATTGAGAAGGATGAATTCATAGCGCAAGACTCGAGTGGTCTGAGAATGCAAAATCTGGAGAAGGTTTCAGGGAAGGAGCTCTTCAAAGATGCCCAATATATGGTCTATCCAGTAAGGGGCTTTCCAGATGTTTCTGTTGCACAAGCATCTGAGCGCTTAGTGAGAGACCATCAGATGAAATACACCCAAACATCTCTCGTATTACAACAGAGGCAGACGATCGAGCTCATACCCATAACCAAAGTGAACTACATGTGGAAAGGAAAGCCTTATGGTTATTATGTCTATGGAAATGAGTTCAAAGTGAACGCGGATGACTATCCCGCCACCTGTTGCTGTTCCGTCATGTAACATCAAATACACCCGACCTGACGTACAGTAACATGAATGCTTTTTATGTTAAGATGAACAAATGTAATCTCTTTTGCCGACACATCCTGGAGTCATGCCATAAAAATGCCACCTGTCCGAACAGGGCATtgtttatacatatatgtaacattttatgcCACCTGACTAACATTATCAACTGTGAATTACTAAACTTATTACTCagattaatgcatttttcagaagACCTAATTGCTGAAGAATACGTAGTATAATCCATCTTTAATctaaaaacatgtattgttattgtttatagATTCACTAGTCAAATTAATCTGTGAATAAAcctttttcaaatta

Function

GO:

id name namespace
GO:0031072 heat shock protein binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89876 lncRNA upstream 144796 3654761 ~ 3655932 (+) True G60743
XR_006251656.1 lncRNA upstream 192751 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA upstream 192751 3607315 ~ 3607977 (+) False LOC122350949
TU89854 lncRNA upstream 220746 3579502 ~ 3579982 (+) True G60728
TU89844 lncRNA upstream 230444 3569494 ~ 3570284 (+) True G60718
TU89925 lncRNA downstream 17055 3824902 ~ 3826416 (+) True G60782
TU89958 lncRNA downstream 77035 3884882 ~ 3885873 (+) True G60803
TU90082 lncRNA downstream 99865 3907712 ~ 3908800 (+) True G60870
TU90154 lncRNA downstream 332762 4140609 ~ 4215206 (+) True G60895
TU90322 lncRNA downstream 493825 4301672 ~ 4342107 (+) True G61007
XM_043246378.1 mRNA upstream 35640 3743485 ~ 3765088 (+) True slc6a6a
XM_043247098.1 mRNA upstream 63624 3726570 ~ 3737104 (+) True abtb1
XM_043247097.1 mRNA upstream 89693 3704865 ~ 3711035 (+) True gpd1a
XM_043247091.1 mRNA upstream 97004 3681533 ~ 3703724 (+) True asic1a
XM_043247089.1 mRNA upstream 148661 3648002 ~ 3652067 (+) True nefmb
XM_043246183.1 mRNA downstream 20662 3828509 ~ 3834154 (+) True LOC122350007
XM_043246186.1 mRNA downstream 20662 3828509 ~ 3834154 (+) False LOC122350007
XM_043246185.1 mRNA downstream 20662 3828509 ~ 3834154 (+) False LOC122350007
XM_043246184.1 mRNA downstream 20662 3828509 ~ 3834154 (+) False LOC122350007
XM_043246189.1 mRNA downstream 20662 3828509 ~ 3834154 (+) False LOC122350007
TU89218 other upstream 1760892 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1764748 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1767665 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1783208 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1882357 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 40767 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 117014 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 240772 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1296723 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1296723 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile