RNA id: XM_043247797.1


Basic Information

Item Value
RNA id XM_043247797.1
length 1987
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC122350992
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22040071 ~ 22054375 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGTTGTTTGTCTTGATGTTTTCTGGAAATAGTTTTAAAtggctatttttgtttttgtttttctgtctagGTGGAGGAGGGAAACGTAAAGGAAGAAGTAAAAAATGGAGGGAGATCCTTCGTTTTCCTCATATCAGTCAGTGCACGGAGTTGAGCAAAACTATTGagCGGGACTATTTCAGCCTGTGTGACAAGCAGCCCATCGGGAGACTTCTGTTCCGCCTCTACTGTGAGACCCGTCCAGAGCTGCAGCGATGCATCCAACTCCTGGACGCCATGGAGGACTACGAGGTGACACCCGACGAGAAGAGGAAGAGTCGAGGAGATGAGATCATCAAGAAGTTTCTCACCAAGCAGTCCTCTGAGTGTGTAGATATAGCTGAAGGTCTCGCTGAAAGTTGCAGAGAAAATCTAGAACTGAGCCCCTGCAAAGAGATCTTCAGTGACTGTCGCAAAGCTCTTCATGACTACTTAAGTGGTGCTCCTTTTGCTGACTATCAGAACAGCATGTACTTCGACCGCTTCCTCCAATGGAAAATGCTCGAAAGACAACCCATCACGAAAGACACATTTCGTCAGTATAGAGTTCTGGGGAAAGGAGGTTTTGGAGAGGTGTGTGCGTGCCAGGTGCGAGCCACAGGAAAAATGTACGCCTGTAAAAAGCTGGAGAAGAAAAGGATAAAGAAGAGGAAGGGGGAAGCCATGGCTCTAAATGAGAAGCAGATTCTGGAGAAGGTCAACAGCAGGTTTGTGGTTAGTTTAGCGTACGCGTATGAGACCAAAGATGCCCTGTGTCTGGTGCTGACCATAATGAACGGCGGCGATCTGAAGTTTCACATCTATAACATGGGAACCCCGGGCTTTGAGAAGGAGCGCGTGCAGTTCTACGCCGCTGAGATCTGCTGCGGTCTCGAGCACCTGCACCGAGAGTCTATCGTCTACAGGGATTTAAAACCAGAGAATATACTCTTAGATGATAATGGTCATATCCGGATCTCAGACCTAGGCTTGGCCATTAAAGTGCCTGATGGAGAACAGATCCGTGGCCGAGTGGGGACCGTGGGCTACATGGCTCCAGAGGTGATCAATAACGAGCGCTATAGCATGAGTCCGGACTGGTGGGGATTGGGTTGTCTGATTTATGAGATGACTGCCGGCCGATCGCCTTTCCGCGCTCGCAAAGAACGAGTGAAGAGAGAAGAGGTGGAGAAGAGGGTgcaagaggaggaagaggagtaCAGCGACAAGTTTTCAGAAGACACCAAAGCCATCTGCAGGATGcTGCTAGCCAAAGACCCTAGTGAGAGGCTTGGCTGTCAGGGGGATGGCGCCACAGAGGTGAAAGCCCACCCTATTTTTCGTTCCATCAACTTTAAGAGGCTTGCAGCAGGCATGCTCGAAGCACCATTTATTCCAGACCCTCAGGCCATCTACTGTAAGGACGTGTTGGACATCGAACAGTTCTCCACAGTGAAAGGGGTGGAGCTGGAGCCCAAAGATGACTCCTTCTACAGCAAAGTATCAACTGGAAGCGTTCCCATCCCCTGGCAAAATGAGATGATAGAGACGGAGTGCTTTAAAGAACTCAACATCTTGAATTTTGATGGCACTGTACCCCCTGACCTGGACTGGAGAGGTCAACCCTCACCCCCACCCAAACAGGGCTTACTGCAGAGACTCTTCGGCCGGCAGGAGTGCTGTGGAAATTGCAGCGACAGTGAGGAGGAGCCCACACGGCTGTGAAGGCGTGGCCTGGCTGTGGCTCCTCCCCTACACCACTGAGGATCtcatttgtttacagtttttgcacatttgtatttttaaaatagctctATATAAACATTGGAATGTATATTTTCACTATATAGCCATGCAGTGTATCTTATTTAAagtcatcaaaatgaaaaggaCATATGTGTCCAAATTAGTGTGACGTAGAAAGGACAGATCATTCAACACTGCTCAAAGTCTCAAAACCGGTTGACAC

Function

GO:

id name namespace
GO:1902017 regulation of cilium assembly biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0006468 protein phosphorylation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0032007 negative regulation of TOR signaling biological_process
GO:0005524 ATP binding molecular_function
GO:0004703 G protein-coupled receptor kinase activity molecular_function

KEGG:

id description
K08291 GRK4_5_6; G protein-coupled receptor kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97789 lncRNA downstream 26393 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 286456 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 395388 21571117 ~ 21644683 (-) True G66046
TU97708 lncRNA downstream 401723 21603675 ~ 21638348 (-) True G66047
TU97710 lncRNA downstream 401723 21631309 ~ 21638348 (-) False G66047
TU97806 lncRNA upstream 10523 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA upstream 10523 22064898 ~ 22068757 (-) False LOC122350973
XR_006251666.1 lncRNA upstream 19312 22073687 ~ 22074471 (-) True LOC122350974
TU97817 lncRNA upstream 239064 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 310526 22364901 ~ 22365113 (-) True G66143
XM_043247261.1 mRNA downstream 96654 21923712 ~ 21943417 (-) False kansl3
XM_043247262.1 mRNA downstream 96654 21923712 ~ 21943417 (-) False kansl3
XM_043247259.1 mRNA downstream 96654 21923712 ~ 21943417 (-) True kansl3
XM_043247263.1 mRNA downstream 96655 21923712 ~ 21943416 (-) False kansl3
XM_043247264.1 mRNA downstream 99390 21923712 ~ 21940681 (-) False kansl3
XM_043247763.1 mRNA upstream 5640 22060015 ~ 22067329 (-) False LOC122350973
XM_043246221.1 mRNA upstream 20635 22075010 ~ 22110087 (-) True antxr1a
XM_043246010.1 mRNA upstream 91148 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 105611 22159986 ~ 22161558 (-) True LOC122349876
XM_043247911.1 mRNA upstream 188827 22243202 ~ 22265861 (-) True gfpt1
TU97791 other downstream 8078 22028732 ~ 22031993 (-) True G66116
TU97796 other downstream 14280 22013973 ~ 22025791 (-) True G66119
TU97752 other downstream 263451 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1586940 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 2606936 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU97805 other upstream 10523 22064898 ~ 22068757 (-) False LOC122350973
TU97809 other upstream 25076 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 27646 22082021 ~ 22096062 (-) False antxr1a
TU97793 other upstream 206864 22261239 ~ 22265815 (-) False gfpt1
TU97794 other upstream 207010 22261385 ~ 22265815 (-) False gfpt1

Expression Profile