RNA id: XM_043247803.1


Basic Information

Item Value
RNA id XM_043247803.1
length 3045
RNA type mRNA
GC content 0.47
exon number 11
gene id fam102aa
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 2106390 ~ 2133931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATAATCTCTATAGAGAGAATCTAAACGCGAGTCGATCCGGAGACAGAATCAAATCTCCTGCAAACACAGGAGACAGAAAACCCTGAAAACACGGCTGTTTCACTCGATGAGTGTCGATGCTGCTCGTGTGTCAGAGCTGGAGAGTTTATTAGGCTGCGCGAGGATCGGTGAGAAAATCCGACGCGATTGATTGTTCGCGGATGATCAATGAAAACATGACCCGCGTCCACGGCCGGATCAAACCGTTCACAGAGAACTGAAGCGGCTCTCGGGTTCATGGCGTTTCTCGTCAAGAAGAAGAAGTTTAAGTTTCAGACGCACGTTACTCTGGAGGAGCTGACCGCCGTGCCGTTCGTCAACGGAGTTTTGTTCTGTAAGATCAGACTGCTGGATGGAGGAGATTTCACAGCTTCATCATCCAGAGAAGAGGTCCACCAGAACGCCGTTCGCTGGAGGAAGAGGTTCTCCTTTGTGTGCAAAATGAGCGCCAACCCCAACACCGGCGTTCTGGACCCCTGCGCGTGCCGCGTCTCGGTCAGGAAGGAACTCAAAGGAGGAAAAGCTTATTCAAAGCTGGGCTTTGCTGATCTGAACATGGCGGAGTTTGCTGGCTCGGGCTCCACCGCTCGCTGCTGTCTGCTGGAGGGATACGACACCAAGAATACCCGGCAGGACAACTCCATCctgaagGTGACCATCGGGATGACCCTCTTATCCGGAGATCCGTGTTTCAAAACTCCCCCAAGCACCGCCAAATCTATATCTGTGGCCGGCCGGGACCCTTCCCTGCAGCTGGACTGTAAAGGAGAAGGAACCGCTGAGGTTTTGCCCCGACTGACCAAACAGAGACCTTCTATACTCGGCTCcgCTCTTCCTGAGGAGGTGGATCAGGTTCCCGATGAAGCGTTTCACACGGGCCATTCACGAAACTCAAGTTATGCCAGCCAGCAGAGCAAACTCtcagGTTACAGCACCGAACACTCCTGCTCCTCCAGTCTGTCTGATCTGACCCATCGCAGGAACACATCTACAGGCAGCAGTGTGAGCGCAGACCCTCCGTCTGAGAGCGACACCCGTCCCGAGCGACCTCCGCGACCCCCGCGGCCCATGCTTCCCTCCAACAGACCGCCACGGTACGACCCCTGCGGCCGCCGGGAACCAAGTGCGCCACAGCCGGCGAAACTGACGCGTCCTTCTGTGTATTCCAGGAGGAAGCAGGATTCGGTGGAGGATCACCCGACCTGGGTCAACGACACGCGGATCGACGCGGACGACATCGTGGAGAAGATCGTCCAGAGTCAGAACTTTTCTGACATCAGTAACAATGAAGacagTAACCTGAGACTGTTTGTGAGCAGAGACGGAACCACAGCACTGAGTGGCATCCAGCTGGGAAACAGGGTCTCTGCTGGAGTCTATGAGCCGGTGGTCATTGAAAGCCATTAGATTTTCCCCCGTGATGTTTCCGTTTCCTCACCAGAATCCCGGAGGAATCACACTAATCTACTCCAGTCACCTCATGAATCAGATAAATGTTTGAGCGCTAAACCCCTGCAGGTGCCTGAAACACACCGCCATGATGCTTTTCCAGCAGATCTGCACGACAGAGACCTGATCTCATGTTTCTGACaggataaaagaaaaagataattGCCCATTTTTGTCTCAAAACCATTATTTGTTTCTAacagttctgagaaaaaagtaaGGCAAGATATACgttcagaattgcaagatataaactgaGAAAACTGGCAgtgtttaaacaaataaaaattaaattcagatttttttttcacctcagAATAGAAATTTAGACAAACTCCAAattgtaaaattcaaaaatggcAATTACCTTTTAGATTTCAGCTGCgtgctgttttgtgtgtgttttgtctcgtctgtttcttctctctcttctgtctctccTCTCGTCCGATGCCGTGTCTCTCATTCGCACTGAACACTAAGTTGTGACGTGACTGGGCTCTTCCTGGAGCGCCGGCCGGTCTGAGTCGCTGTGTCTTGGGTTTTCCTCTCGTCTTAAACTCGTTGCTGCGCGACACAAAACTCCCTCCGAACAGATTCTAGTGTTATAAAACCAGTTGAATGCACTTTACGAGAGAATCTCTCAGAAACCGTCCAGGTCACATTGCATctcaattaaagaaaaaaaaaattgactgaaAATGAGCTCACCCTCAGGTCGTTCGAGACGAGTTTGTTACATCACGAGatgctcagcagtgaatgggtgccgtcagaatgagagcccaaacatCACattaatccacagcactccggtccatcagttaatgtcagAAAAGACgtgcattttcatatttcataaccGAGGATCTGAGGAGGACTACATTTCCAGCACTTTTCAATTTGCTCCTTTcgatttttaatactttttttttgtagctatGAGAggcatttttgtcatttccatCACAAAtaattctgattattttcatttaaataattgctttatttttcacgTTAATTTTCTAATtactatttttgcatttcaagAATTTTAGGATGATGTAattaaatgccatttaaaaaaaaaaaaaaaaaccctgcaaatCTTAATTAAGACtaataatagtttttcttttttcagtgaattttgattttgtgatttaaaatatgatctggacgtttttgggggtttttttgtcgCAAGGTTTCATGAGATTCGCCGCAAATACTTTTGGAAGCCAAACCGCATAAAATACCTAATATTTCTTTACGTCTTctgtaaaaacatgtttgttgatGTTCAGCGTGActctaaatgcaaatgtaattcaTATCAGGACAGTAAAAGTTGGTCTTTATCACTCTGAAGGTCCTCAGGACGGGAACACCTCATGATGTTTTTTCAGCCGGCTGGTTATTGTCCTTCgagcaatcacacacacactcacacacagacagacacacacacacacacacacagacacagacagacacacacacacagacagacacacacacacagacagacagacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89181 lncRNA upstream 61740 2041502 ~ 2044650 (+) False G60279
TU89182 lncRNA upstream 61740 2041502 ~ 2044650 (+) False G60279
TU89184 lncRNA upstream 61740 2041502 ~ 2044650 (+) False G60279
TU89178 lncRNA upstream 61740 2043191 ~ 2044650 (+) False G60279
TU89185 lncRNA upstream 63926 2041502 ~ 2042464 (+) False G60279
TU89205 lncRNA downstream 19540 2153471 ~ 2156394 (+) True G60296
TU89206 lncRNA downstream 25383 2159314 ~ 2162044 (+) True G60297
TU89233 lncRNA downstream 29376 2163307 ~ 2165242 (+) True G60323
TU89239 lncRNA downstream 59026 2192957 ~ 2204310 (+) True G60328
TU89248 lncRNA downstream 210005 2343936 ~ 2344169 (+) True G60335
XM_043246917.1 mRNA upstream 2484 2096159 ~ 2103906 (+) True naif1
XM_043246919.1 mRNA upstream 2484 2096166 ~ 2103906 (+) False naif1
XM_043247302.1 mRNA upstream 34721 2069818 ~ 2071669 (+) True si:ch211-51h9.7
XM_043247582.1 mRNA upstream 37102 2061541 ~ 2069288 (+) True gle1
XM_043247567.1 mRNA upstream 47665 2055331 ~ 2058725 (+) False mrpl40
XM_043246147.1 mRNA downstream 5299 2139230 ~ 2152391 (+) True sh3glb2a
XM_043246149.1 mRNA downstream 5299 2139230 ~ 2152391 (+) False sh3glb2a
XM_043246150.1 mRNA downstream 5299 2139230 ~ 2152391 (+) False sh3glb2a
XM_043246151.1 mRNA downstream 5299 2139230 ~ 2152391 (+) False sh3glb2a
XM_043246152.1 mRNA downstream 5299 2139230 ~ 2152391 (+) False sh3glb2a
TU89218 other upstream 66554 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 70410 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 73327 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 88870 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 188019 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 1714683 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 1790930 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 1914688 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 2970639 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 2970639 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile