RNA id: XM_043247834.1


Basic Information

Item Value
RNA id XM_043247834.1
length 5978
RNA type mRNA
GC content 0.48
exon number 23
gene id atp2b3a
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6774874 ~ 6801595 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAAGGGAttgcggagagagagagagagagagagagaggggggagcGAGAGGCCTGGATCTCGTTCCGCCCTTCCCCCATCTCCCGTCCTCCAGCGCTgggatgctgctgctgctgctgccatcACCGAGAGATGCGCGTCAAACGGGCATCATCAGCATGTAGACCCACATCTCTCCTTCACCCATCACTCTATCAGTCAGCGCCAAAAATAACAGCAACGATGTGACCAAAACGAGCCTCCTTTACGTTCCCGACAGCACAACACGCCGTTTTTAACCGATTAATTAATGCGGACATGGTACAATCTCATCTGCATCATTCAGGTTTTCTTCCGCATAAGATGAAGTGCTCACCACCGTCTGCTGCCTCCTGCTCCCTTCATTTGATTTCTATTCTGCACCGTTGCGCATCATCTGCATTTGGAATAGCGTAAAGGTCAAATGATGTGACTTTCATTTTTTGTGTTCTCCATGATGGGCATGATTTGAGGCTAAATCACTGGATATCATTTCTTTTTTCGACTCAGCGTCAAATGTCCTTGGAACATGGCCTGCGCGGTTTTGTACCAACGTTATTCCTGTGTCACTAGATCctctttattgtttattaatcagTAACGCTCGCTTCATTTGGTCTTCATAGAGATGGATTGGCACAATGGCTACCACTTTATTTGCTGACTTTTTCTTTATGGGGGGAAATTTCAGGGGAGCCACAGCTACCGCACCATAGAACCGAAAAACCCCAAACAATCTCACAATCTCAGTATGGAGAACTACATACAGAACATCTTAGAAATAGGCGAGGAGGAatataaataagacaaaagAGATCACACATTTTCCCAGGTATCCATCTTTTAGCTCATAGCACCTGCTAAAAAGCTTCCAGTCTTCCACAACCAACACGCCATCATGGGGGATCTGGGCAATAGCACGGTAGACTTCCACCCTAAGAAGCCGGGGATGGACAAAGGAAGCCATGAGGGAGATTTTGGAGTGACAATAGATGATCTGTGCTCACTGATGGAGCTGAGGGGACCCGAGGCCCTGCAGAAGATCCAGGAGAActacacagacacagaaaccCTCTGTCACAGACTCAAGACTTCACCTGCAGATGGATTATCGGACAATCCTGCGGACCTGGAGAAACGTCGGCTAGTGTTTGGAATGAACTTCATCCCTCCTAAGAAGCCCAAGACCTTCCTTCAGCTGGTGTGGGAGGCTCTACAGGATGTTACCCTTATAATCCTGGaaatagcggccattatttccCTCGGACTGTCCTTTTACCAGCCGCCAGGAGGGGACACTGAAGcgTGTGGTAATGTGAGTGCAGGTGCGGAGGACGAGGGAGAGGCAGAGGCGGGCTGGATCGAGGGTGCAGCTATCCTGCTCTCGGTGCTCTGCGTGGTGGTGGTGACAGCGTTTAATGACTGGAGCAAAGAAAAGCAGTTCCGTGGCCTGCAGAGCCGTATCGAGCAGGAGCAGCGCTTCGCTGTGGTGCGGAACGGCACAGTCATTCAGATCCCCGTGGCTGAGATGGTGGTGGGGGATATTGCCCAGGTCAAATATGGCGACCTCCTGCCTGCGGATGGTGTTCTCATCCAAGGCAACGACCTCAAGATCGATGAGAGCTCCCTCACTGGAGAGTCTGATCACGTACGCAAATCCATCGACAAGGATCCCATGCTGCTGTCAGGCACTCATGTAATGGAGGGCTCTGGGAAAATGGTGGTCACTGCTGTTGGGGTCAACTCTCAAACGGGAATCATCTTCACCCTTCTGGGGGCCGGAGAGatggaggaagagaagaaagacTGCAAGAAAGAGGTCAATAGTAATTCATCCACGCAGTTCCCCAGTGTTGAAGCCAAAGAACACAACATCATAAATGGGAAACAAGACGGGACCCTGGagaacaatcaaaataaagCTAAGAAACAGGATGAGGCTGTTGCCATGGAGATGCAGCCTTTGAAGAGTGCAGAAGGTGGGGAAgtggaggagaaagagaagaaaaaagccAGTGTGCCCAAGAAGGAAAAATCAGTTCTTCAGGGCAAACTCACCAAGCTGGCAGTGCAAATCGGGAAAGCAGGTCTGGTGATGTCCGCCATCACTGTGATTATCCTGATGCTGTACTTCGTGATCGAAACGTTCGTCATTCAGGGACGGGTCTGGCTGACAGAATGCACACCTATTTACGTGCAGTACTTTGTCAAATTCTTCATCATCGGAGTTACAGTTCTGGTGGTGGCTGTGCCAGAGGGTTTGCCACTGGCTGTCACCATATCCCTGGCGTACTCAGTAAAGAAAATGATGAAGGACAATAACCTGGTGCGTCATTTAGACGCATGTGAGACTATGGGCAATGCTACGGCAATTTGCTCAGATAAAACAGGGACCCTCACCACTAACCGGATGACAGTAGTGCAGATTTATGTAGGGGACCAGCACTTCCGTGACATCCCAAGACCAGACCAGATTAACCCAAAGACTCTTGAGCTCACCAGCAGTGCTATTGCTGTGAACTGCGCCTACACCTCCAAAATAATGGCTGCAGATAAGGAAGGTGGGCTGCCCAAACAAGTGGGTAATAAGACAGAATGTTCTCTGCTGGGACTCGTGCTGGACCTGAAGCAAGACTATCAAGCTGTGAGGGAGCAGATCCCTGAAGAGAAGCTCTATAAAGTCTACACCTTTAATTCTGTCAGGAAATCCATGAGCACCGTCATTCAGATGCCTGACGGAAGCTTCCGCTTGTACAGCAAAGGAGCCTCTGAGATCCTGCTCAAGAAGTGCTCGTTCATCTTGGGCGGTGACGGCGAGGCTCGTGCTTTTAGGCCACGGGACAGAGATGAGATGGTGAAGAAAGTGATTGAACCGATGGCATGCGATGGCCTTCGTACGATTTGCATCGCTTACCGGGAGCTCCCAGCTGACCCCATGCCAGAATGGGACAATGAGACAGACATAGTCTCCAACCTTATCTGCATCACAGTGGTCGGCATTGAAGACCCAGTTCGACCTGAGGTCCCAGACGCCATCAAGAAGTGCCAGCGAGCAGGCATCACCGTGCGTATGGTGACAGGTGACAATATAAACACTGCACGTGCCATCGCTGCCAAATGTGGCATCATCCATCCTGGAGACGACTTCCTGTGTATGGAAGGGAAGGACTTCAACAGGCGAATCAGAAATGAGAAAGGAGAGATTGAGCAAGAGCGTATTGACAAAATTTGGCCCAAGCTCAGAGTTCTTGCTCGTTCCTCCCctacagacaaacacacattagTCAAAGGTATCATAGACAGCACCATTGTAGAGCAAAGGCAGGTGGTTGCAGTCACCGGTGACGGCACAAATGACGGACCTGCTCTTAAGAAGGCTGATGTGGGGTTTGCAATGGGCATCGCTGGTACAGATGTGGCCAAGGAGGCCTCTGATATCATCCTGACAGACGATAACTTCTCCAGCATAGTAAAGGCTGTGATGTGGGGACGAAATGTGTATGACAGCATCTCCAAGTTCTTACAGTTTCAGCTCACAGTGAACGTGGTGGCTGTCATAGTAGCCTTCACTGGTGCCTGTATCACGCAGGATTCACCCCTTAAGGCAGTGCAGATGCTGTGGGTCAATCTGATCATGGACACATTTGCTTCTCTGGCTCTTGCCACAGAGCCACCCACCGAAGCGTTGCTCCTGAGGAAGCCCTACGGCCGAAACAACCCCCTCATATCCAGAACCATGATGAAGAACATCCTTGGCCATGCAGTGTACCAGCTTATCATCATCTTCACCCTGCTCTTTGTAGGTGAGAAGATCTTTGACATAGACAGTGGACGTAACGCTCCACTTCACTCTCCTCCGTCGGAGCATTACACCATCATCTTTAACACCTTTGTCCTCATGCAACTCTTCAATGAAATCAATGCTCGTAAGATCCACGGAGAGAGGAACGTGTTTGATGGGATCTTTTCAAACCCCATCTTCTGTTCGATTGTGCTGGGGACCTTTGCAATACAGATTGTGATTGTGCAGTTTGGTGGGAAGCCTTTCAGCTGTTCCCCCTTAAATGTGGAGCAGTGGCTTTGGTGCCTGTTTGTGGGAATGGGTGAGCTGATCTGGGGACAGGTGATAGCATCAGTGCCAACACATCAGCTGAAGTGTCTGAAAGAAGCAGGCCACGGGCCGGCTCCGGACGAGATCATGGATGAGGATCTAgctgaggatgaggaggagatCGACTATGCCGAGAGAGAGCTGAGACGAGGACAGATCCTGTGGTTCAGAGGACTCAATCGAATTCAGACTCAGaTGGAGGTAGTGAGTACCTTCAAGAGAAGTGGTTCGTTTCAGGGTGCAGTGAGACGCCGCTCTTCAGTGCTCAGCCAACTCCATGACATCCGGGTGGTGAAAGCTTTCCGTAGCTCCCTCTACGACGGCATCGAGCGGCCCGAGTCGCGGAACTCCATTCATGACTTCCAGGCGCACCCGGAGTTCATCATCACGGACTCGGTCCACAACATCCCCCTGATCGACGAGACGGACGTGGACGACGAATCGGAACGCTCCAACCATAACCACGTGCGTGTGGCGCTTCGTCACCCCGGCCCTCACTCTCAGCCCCAGGCGCCCCAGAGGCCCCCGCGATCCCGCTACCCGTCTCGCCCGCTGAGGCAGCAGAGCCTGCCGGTCACCCTCAACTGCAACAACAACGCCGCCGAGAGCCGCGTCTACCTGGGCTCGAGCGTTCCCCCGTGCCCCGCGAGCCCTCTGCACAGCCTGGAGACGTGCCTCTGAAAGGGGGGCACAGACTGCCAGCCAGACGGAGAAACGCTCGTTTCTGTACCTAATTTTAGTTCCTGTCACTATCACAGATTCACTGCTTCAAAATGTTCCAGTGGTTCTTTACAGTATCTTGTGTGACCCAAAGACAATCCCGCTCCGCATGAAAGTGACCGATTATGTTCTCATACAGTATGTTGCACTCGAAAGAAATACCCAAAACGATGAGATGGATCTACGTGCGCGCGTAGACGAGGACTCTGACTAAAGATTTTAAAGACTGAGCCTAGTGAAAGTGTacaactgggaaaaaaaaaaagagagaggaaaaagatgTTTATTTGGGGATTACTCCTTTCGCCTTTTAGTTAATAACATTATTGTTCCGATTATTATAGTGGTTATATTTCTGCTAAAACTACGACAATTAATACTACAGTTACTATACTCCAGTTATGATACTTCATCGTTTAGCTTTATATAACtaagtatgtttgtatgtatgacgtaagtctgtatgtatgtgtactttgtttgtttgtttgtttgctgttgttAAAATCCGTGTCTATGTTCTCATTGGTTCCACACGTGCccctctctctgttttctgtgttaGAGTGTGATGTGTAtgtccaatttaaaaaaaaaaaaaaaaaaaaaaaagaaatgaaattacAGAACATATATCagcagcataaataaaataaaatctaaccATTGGAGGAAAATGTTAGAATATTTGCTggaaattgcaaaaaaagaagaggCAATGGCGCGGGAAGCATCTCGCCCATTCGTCAAACACCACATAATCCACTTCAGAACTAAAGAAAAATActgtatacttttatatttctaCCATGAGAAAgtatcaattatttttatatgatgcATTTTCATGTCGGTGAAGCAAATCAGCAAGATTacctgaaattatttattttcctatgtgacatttatttttctttacgtATGTCCgataggaaaataaatattcaggAAACATTGGACGGggaaatataaatcattttgccAACTGTGAGAACTGTTGGCCCTTGTATGCTCAAAATGTGGTGTTTATGGGTATAGAAAATGTTTCGACACACAAGATCGTGTAGAGcccttcattcatcttttaaaCTTGTATTCAAGTAATTAAACATCTGCatgatttatgaca

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005388 calcium transmembrane transporter activity, phosphorylative mechanism molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K05850 ATP2B; P-type Ca2+ transporter type 2B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91286 lncRNA downstream 116590 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 212956 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 223163 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 306458 6467953 ~ 6468416 (-) True G61582
XR_006251622.1 lncRNA downstream 499664 6273884 ~ 6275210 (-) True LOC122350799
TU91452 lncRNA upstream 60439 6862028 ~ 6862954 (-) True G61782
TU91454 lncRNA upstream 216001 7017590 ~ 7056420 (-) False xpr1a
TU91585 lncRNA upstream 473001 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 504523 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 576166 7377755 ~ 7378459 (-) True LOC122350886
XM_043247844.1 mRNA downstream 138 6771172 ~ 6774736 (-) False si:dkeyp-110g5.4
XM_043247846.1 mRNA downstream 138 6771172 ~ 6774736 (-) True si:dkeyp-110g5.4
XM_043247845.1 mRNA downstream 138 6771172 ~ 6774736 (-) False si:dkeyp-110g5.4
XM_043247350.1 mRNA downstream 4390 6766966 ~ 6770484 (-) True igf3
XM_043247842.1 mRNA downstream 10269 6758204 ~ 6764605 (-) True serping1
XM_043246913.1 mRNA upstream 6252 6807841 ~ 6814340 (-) False dedd
XM_043246912.1 mRNA upstream 6252 6807841 ~ 6814340 (-) True dedd
XM_043246321.1 mRNA upstream 12882 6814471 ~ 6816747 (-) True LOC122350104
XM_043247485.1 mRNA upstream 15322 6816911 ~ 6824013 (-) True bgna
XM_043246634.1 mRNA upstream 23749 6825338 ~ 6834435 (-) True si:dkey-6n6.1
TU91179 other downstream 331892 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 849527 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1157210 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1165304 5605562 ~ 5609570 (-) False c8h9orf116
XR_006251650.1 other downstream 1263931 5476213 ~ 5510943 (-) False pip5k1bb
TU91442 other upstream 12899 6814488 ~ 6816724 (-) False LOC122350104
TU91479 other upstream 293309 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 876827 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1315419 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1590756 8392345 ~ 8416553 (-) False eps15

Expression Profile