RNA id: XM_043247842.1


Basic Information

Item Value
RNA id XM_043247842.1
length 2130
RNA type mRNA
GC content 0.45
exon number 10
gene id serping1
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6758204 ~ 6764605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACATCTGTGTAATGATTTACCAATCAGCAGGGGAAAGAAAACACAGCAAGAGGAGCAGGCAGAAGAGGACAGACCTTTATAGGCTTGACGCTTCTTTCCTGTTGAAATTAGATCTGtGATTGAATCCAACAGCATGTTTCGCGTCCTCCTGTTGCTCTGTGCGGGTCTTTCCCTGTCTACCTGCGACATCACTGTTCCTCAAGACTTCAGCATTACTCTTTCTTGTCTTCCTGACGATGCCACTTCGCTGTCTGAACCTGAATACACCTGGAGCTTCACGTCCGCTCAGACGCAGCAGCAGCACACACTTCAGGAGAAAGGAAAAATCCTGAACCTCAGAAACATAAATACCACCCAAGAAGGACAGTACAAGTGTGTTCAGGACGGCTTTAAAGAAGAAGACCGTATGAGGTTGAGCAGAACATTCACAATACGCGTGGAAGagcCCCTAGCCCTCCGAGAATGGCAGGTCATCAAAGGAGTAGCTGGGAATGACGTGACGCTTCCATGCAAGGCTGCTACGTTTTCCTCTTCCGGAGAGACACAAAACGACTCTGTTGTCTGGAAACGAGAGACAAAAAATGGTGTGATGCTTCTCAAGCCCGACAAAAACACAGATGGCCAAGAGGAGGACAAGACACCTCAGAGGATTTTCTGGAGCGAGAATTTTCCTGATAGAAAGGACTGGGCAATTAAAATTAGTCAGACCAAAGAGGAAGATGCTGGGATGTACCACTGTGTCATAACTAATACATCTCAAACGCTGTCAGTGGAGCTGGAACTGGAAGCCCCTCCTCTGCCCCGCTGCTTTGGCCACACCGGCCCATGGGAGGACTGTCAAGAACAGGACAGCAGGTCAGGGACGGTGATTCTGCAGGATTCACTCAGAGACTTCTCTGCCTCTATGTACGCTGAACTTAAAGCCTTAAAACCCGAAGCCAACTTGATCTTCTCCCCAGTCAGCATTGCTCTAGCTCTTTACAACCTGCTACTGGGTGCTCGAGCAGAGACCAGAACACAGCTGGAAAGTGCTCTTAGGCTTCCTCCAGAATTCTCCTGTGTGCATTATGAGacaaagaaactaaaaaaagtgATAAAGGACACGCTGGAAATCGCCTCTGCTATCTTTTATTCCCCAGAGCAACAGTTGGGAGAAGTGTTTGTCAACCAGTCAAAGGAGTTCTATGATGCCGTGCCAGAGAAGCTGACCGATGACGCCGAAGAAAACTTGATTCTCATCAATCAGTGGGTGGCAAAGAAGACCAACCAGAAAATCACTCAGTTGATGGATTATATGGATCCCAcctacacatttattttgttaaatgcgGTCTACTTTAATGGTAAATGGAagaccgtttttgaatccacaAATAAATGGGACAACTTCACGACGTTTTCAGGTGAGCTCATAGAAGTGCAGACTCTCTACAGCCCCAAGTACAACCTTCAAATGGGCtacaacaaaaaattacaagCTGAGGTTGCAAAGTTCCCTCTCACGGGTAAAAACAGCCTGTACATACTGATTCCCCACACAACGACAGAAAAATCCTTTGTGTTGATGGAgaataatataaacaaagattCTATTGAAGCAATGATATCTGAGATGAATAAAATTCCAGCCCAAACCGCTGAGGTCACACTGCCTAAAATTAAACTTACAGTGGACACACAACTAGGGGACGTACTGAAGAAACAGGGTTTGTCAGATCTCTTCTCAGATCCTAACTTGTGTGGAATATTTCAGGAGGACTCTAAATCATTCATCTCAGAAGCTCGTCACAGGGCCTTTCTCTCGCTGACGGAGAAGGGAGTGGAGGCCGCTGCAGCCACAAGCATCTCGTTTTCTCGCTCCTTCTCTTCTTTTACAGCTCTGCAGCCCTTCGTTCTTATACTGTGGAGCGATGAGGCTGCCGCTCCGCTTTTCATGGGAAGAATAATCAATCCACTCAACCCATAAAAAGACATCACAACAGTGtctcgccaaaaaaaaaaaaaatcaaactttCAGTtctacattcattcattcttttatcACAAATTCATTTATGTAACAATATCACGTTATGCATAGAGTTAGAATGCATGCAGAATCTCGGTCATTAAAGGTGTGCTTTACATCA

Function

GO:

id name namespace
GO:0005615 extracellular space cellular_component

KEGG:

id description
K04001 SERPING1, C1INH; C1 inhibitor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91286 lncRNA downstream 99920 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 196286 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 206493 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 289788 6467953 ~ 6468416 (-) True G61582
XR_006251622.1 lncRNA downstream 482994 6273884 ~ 6275210 (-) True LOC122350799
TU91452 lncRNA upstream 97423 6862028 ~ 6862954 (-) True G61782
TU91454 lncRNA upstream 252985 7017590 ~ 7056420 (-) False xpr1a
TU91585 lncRNA upstream 509985 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 541507 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 613150 7377755 ~ 7378459 (-) True LOC122350886
XM_043247269.1 mRNA downstream 48239 6704048 ~ 6709965 (-) True cabp4
XM_043247270.1 mRNA downstream 48254 6704048 ~ 6709950 (-) False cabp4
XM_043247975.1 mRNA downstream 67543 6679661 ~ 6690661 (-) False LOC122351102
XM_043247976.1 mRNA downstream 67543 6679661 ~ 6690661 (-) True LOC122351102
XM_043247585.1 mRNA downstream 80051 6670280 ~ 6678153 (-) True b3gnt3.4
XM_043247350.1 mRNA upstream 2361 6766966 ~ 6770484 (-) True igf3
XM_043247844.1 mRNA upstream 6567 6771172 ~ 6774736 (-) False si:dkeyp-110g5.4
XM_043247846.1 mRNA upstream 6567 6771172 ~ 6774736 (-) True si:dkeyp-110g5.4
XM_043247845.1 mRNA upstream 6567 6771172 ~ 6774736 (-) False si:dkeyp-110g5.4
XM_043247834.1 mRNA upstream 10269 6774874 ~ 6801589 (-) True atp2b3a
TU91179 other downstream 315222 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 832857 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1140540 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1148634 5605562 ~ 5609570 (-) False c8h9orf116
XR_006251650.1 other downstream 1247261 5476213 ~ 5510943 (-) False pip5k1bb
TU91442 other upstream 49883 6814488 ~ 6816724 (-) False LOC122350104
TU91479 other upstream 330293 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 913811 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1352403 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1627740 8392345 ~ 8416553 (-) False eps15

Expression Profile