RNA id: XM_043247845.1


Basic Information

Item Value
RNA id XM_043247845.1
length 2237
RNA type mRNA
GC content 0.41
exon number 4
gene id si:dkeyp-110g5.4
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6771172 ~ 6774736 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTATTctagaatatttgtttttaataattcgAATGTAAGATTACAATAGGTTAATACGATTACAATCAAGTTAAATTGAGCTAGTAATTCCCACtgtaaaaaactgtttaaattatttaattatttagcatctaaatgatttgttttacatttcagtttcatgtaCGATGAAAACAGTCAATCATAATCACCACCTGACTTTAAAAAGCAGGAACGTTTAACATCAGGTGACGGCAGAGCGTGCTTTTGATAAATCAAAAGTTTTTGATAAATACAGCGTTGACTGGTGTGGCTATTGATGTAgttaataaaagttattaaCAAATAACCAGTGAATAAATTGGTAAAATGCATAATAACGAACTATTCACTAAAATTTCACactcttttagattttttttgtccgCGGTCTACTTCGAATTACATTAGACTTAAAAcgaggacttttattttgacaacaaACTCCGGAAGTTTTCTCCGGAAGTCCTCGTTGAGTGCAAAGAGTTGAACCTGGCTGCGTATGTTCAAAACAAACCggtttatttttgtggaaaacctCCGCGTGAATTAAAGTTGTGCTCTTTGGTGTGAAGACATGAATGTGCCGCTTATACTTCGAGTCAAGTGAAAAATTTTAGgtacataacatttattttaggttgGATTGGTATATGTTTCCTGTATACGTTTGTGAGCTCGTTCGTGAATCCAGGAAGCTCAACCTGGTTTAGACTCTTCTGAGTGCCTTGCATGGAGAACATTGTGGTTTACATTCCCAAGGAAGCATGTGTCAAAAACATGCCTCTGCAGTCCCTGTCCAGATCCACAGCCAGGAAGATCAGTGTCGCTCTGTTTCCGCATGGATCAGAGAAACAGATGCTACAGACAGTGACTTGGATCGGTCCGGTTGAGCTACGGGAAAAGGAAGTGGCTGTGGGCAAGGGCAGAAGAGAACCGATCCCACTGAGCCAGAGGCCACTGCTCTCCAAAATAACTCCAGGCCAGTTTTCGCTGCCTGTTGTGAGTTCCAGTGTCACTGCCTTTAAGGTCTTAAGAACGGTTTTAAAAGCGCAGAAGcctaaaatacaattttcagGGCTGGAAAATGATGCCGCTTCTCTACCCAGCATCAGGGATTCTGTTCCGAAAAATGCTATTATTGTGTATCACGGCCAGATCTTTCTGTCGGTGAGGAAGTCACATTGCAGGCGAGTGAGATTACAAAACTCTCCCTCAGTGTCTCCTTGTAAACAGAACCAAATAAAGACACCTGGCTGTCAGGTGCAGCTGCTCCTGGACACTTCACACAGACCACAACAGAGCAAGAGACAGGATGTTCAAACTCCAGTCAGAGATCTTGATATTAACGTACGGATTTCACCGCTTCTGCACAAAGCTTCTGAAGAAATAACTGAGAAATGCTTTACTGACAAAGAGTGTcaaaagGAAGATGAGTCCAGGTCGACGCGTAGCCCACCCAAACCTCTTGAGGATCTGGAGTCTGGTCAGGAGACGTCTAGTTCCCAGCCCAATCTCCTCCGGCAGTCACAGATCATCCACTCATCTCCTGTCGTCTCAGAACCGCCTGAAGCTGcgggaggagaaagagagatgcaTGAGGATGACAATGAGCGCTTAGAGGGCGCGTTGCTCCCCAGGGCTGAGAGCTGTCTTGCGTTTGATTTTGAACAGTTGGCCCAGGAGGAGAGAATCAACCACCTACGAGCTCGGCTCAGACAGAAGGAAGCAGCTCTCAGCGTCTTTAACGCAAAGCCAACAGATCAGATTTAGAGGAACAGACTGCACCAAAGAGAACTGTTCAGGAGGTGTACAAGCTACTAGTGAACCATTTTAGGGCGAACAGCAGAATaatgttttaaagctttaaagaaaGAGTCTTCATTAACTCCCCCTCACGATGTCTCAACCCTTTACGAAAGAAAGTCATTTAGATTTGGGGCatcttgagggtgagtaaattatggcaAAAATACCACTTTAAGGTGAGGGTGTTTGTTAAttcaattgtttattatttagtagCACAAATATTGGCgttttgataaaatatttatgccAAAAAGATGTAAGGAggtatttatgtgtttgtgcaataaATACAGTGAATATTTTGTGAACAGCATCGTTTGTTACCACAAAATCATTTTggatttcattcattaaaattttgaaattattatacattaattatccgttcaaataaaaggttttatgtC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91286 lncRNA downstream 112888 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 209254 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 219461 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 302756 6467953 ~ 6468416 (-) True G61582
XR_006251622.1 lncRNA downstream 495962 6273884 ~ 6275210 (-) True LOC122350799
TU91452 lncRNA upstream 87292 6862028 ~ 6862954 (-) True G61782
TU91454 lncRNA upstream 242854 7017590 ~ 7056420 (-) False xpr1a
TU91585 lncRNA upstream 499854 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 531376 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 603019 7377755 ~ 7378459 (-) True LOC122350886
XM_043247350.1 mRNA downstream 688 6766966 ~ 6770484 (-) True igf3
XM_043247842.1 mRNA downstream 6567 6758204 ~ 6764605 (-) True serping1
XM_043247269.1 mRNA downstream 61207 6704048 ~ 6709965 (-) True cabp4
XM_043247270.1 mRNA downstream 61222 6704048 ~ 6709950 (-) False cabp4
XM_043247976.1 mRNA downstream 80511 6679661 ~ 6690661 (-) True LOC122351102
XM_043247834.1 mRNA upstream 138 6774874 ~ 6801589 (-) True atp2b3a
XM_043247836.1 mRNA upstream 138 6774874 ~ 6801586 (-) False atp2b3a
XM_043247837.1 mRNA upstream 138 6774874 ~ 6801585 (-) False atp2b3a
XM_043247838.1 mRNA upstream 138 6774874 ~ 6801582 (-) False atp2b3a
XM_043247835.1 mRNA upstream 138 6774874 ~ 6800000 (-) False atp2b3a
TU91179 other downstream 328190 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 845825 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1153508 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1161602 5605562 ~ 5609570 (-) False c8h9orf116
XR_006251650.1 other downstream 1260229 5476213 ~ 5510943 (-) False pip5k1bb
TU91442 other upstream 39752 6814488 ~ 6816724 (-) False LOC122350104
TU91479 other upstream 320162 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 903680 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1342272 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1617609 8392345 ~ 8416553 (-) False eps15

Expression Profile