RNA id: XM_043247870.1


Basic Information

Item Value
RNA id XM_043247870.1
length 1171
RNA type mRNA
GC content 0.41
exon number 8
gene id rer1
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22875118 ~ 22880115 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGGCCGGGGGTCCAGCGCAGGGAGCGATGTGTTCCGCGCGCGGCTGCTCTGGTCTGATCTGCTGCGGTTAACAGAAGCACTGACGTGTTCACAGAGCAGCAGCGCGAGAGTGACACAGCGGCACAACCGGACAGAATGCCAGAAGGAGACAGTGCCGGTGAATCCATCCATGGGAAACCATCAGCGATCGGAAACTTCTTTAAACGGCTCGGGCAGATTTATCAGTCATGGTTGGACAAGTCAACACCGTTCTCATCAGTCCGATGGGCAGTCACTCTTATTCTAACGGCCATATATATGATCAGAGTATATATACTACAGggGTGGTACATAGTCACATATGCTCTTGGGATCTACCACCTAAACCTCTTCATCGCGTTCCTTTCACCAAAAGTGGATCCCTCGTTGCTTGACGATCCAGATGAGGGTCCAGCACTACCCACAAAACAGAACGAAGAGTTCCGGCCGTTCATCAGGAGGTTGCCAGAATTCAAATTCTGGCATTCAGCGACGAAAGGCATCATCATCGCTATGATTTGCACATTCTTCGAAGCCTTCAACGTGCCAGTGTTCTGGCCCATCCTCGTAATGTATTTCATCATGCTGTTCTGCATCACCATGAAACGGCAGATCAAGCACATGATCAAGTATAGATACCTGCCCTTCACACACGGGAAGAGGACTTACAGAGaggAAACATAAAGTTGAGTGCGTTAACTATTACAAATGGATGGAGAGGGTTgaagttttttgtgtttttttttgtgctgggCCATActagtatagtttttttttttttttttttttcaaaaaggcaAACGGAAAGAACTTCAATAACCTCAATAATCAATGGAGATGAGATACATTTTCCtattcaagtgtttttttttttttttttggaggggggagatatatattaaaatgtataatttttatggTTAGCATGTttgagttcttttttttttttttttttccttctttttttgacaatggcattttactgtattaaattaatcttcatcaaaacaaaatagATTTGTTAATTCCTGATTAAAGACATTGCATGTTTTAGGTTTTCTTGTGCTGCTGGTtaagagaaaacaaaatcattttaataactaAGTGTAAATTTTTCACTCCAAATACTATTAAAAGGCTGTGTCCCTTCA

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98021 lncRNA downstream 138122 22736664 ~ 22736996 (-) False LOC122350259
TU97992 lncRNA downstream 169993 22699448 ~ 22705125 (-) True G66235
TU97955 lncRNA downstream 217459 22654971 ~ 22657659 (-) True G66217
TU97942 lncRNA downstream 249941 22580402 ~ 22625177 (-) True G66207
TU97941 lncRNA downstream 325800 22547651 ~ 22549318 (-) True G66206
TU98115 lncRNA upstream 46366 22926481 ~ 22931145 (-) True tprg1l
TU98162 lncRNA upstream 102596 22982711 ~ 22983165 (-) True G66337
TU98165 lncRNA upstream 105231 22985346 ~ 22986961 (-) True G66339
XR_006251647.1 lncRNA upstream 171767 23051882 ~ 23054592 (-) True LOC122350914
TU98198 lncRNA upstream 360857 23240972 ~ 23245510 (-) True G66368
XM_043246253.1 mRNA downstream 220 22841565 ~ 22874898 (-) False aak1a
XM_043246252.1 mRNA downstream 220 22841565 ~ 22874898 (-) True aak1a
XM_043246244.1 mRNA downstream 222 22837109 ~ 22874896 (-) False aak1a
XM_043246243.1 mRNA downstream 222 22837109 ~ 22874896 (-) False aak1a
XM_043246245.1 mRNA downstream 224 22837109 ~ 22874894 (-) False aak1a
XM_043247500.1 mRNA upstream 908 22881023 ~ 22914169 (-) True tp73
XM_043246034.1 mRNA upstream 46341 22926456 ~ 22931165 (-) False tprg1l
XM_043247540.1 mRNA upstream 52018 22932133 ~ 22935123 (-) True LOC122350809
XM_043247100.1 mRNA upstream 67741 22947856 ~ 22955895 (-) True kiaa2013
XM_043246035.1 mRNA upstream 554756 23434871 ~ 23446449 (-) True clcn6
TU98104 other downstream 39527 22834687 ~ 22835591 (-) False ddx51
TU98109 other downstream 78756 22795622 ~ 22796362 (-) True G66310
XR_006251538.1 other downstream 234811 22637275 ~ 22640307 (-) True LOC122349902
TU97793 other downstream 609303 22261239 ~ 22265815 (-) False gfpt1
TU98264 other upstream 696838 23576953 ~ 23583368 (-) True G66410
TU98323 other upstream 777950 23658065 ~ 23663536 (-) True G66451
TU98447 other upstream 940385 23820500 ~ 23821991 (-) False LOC122350426
TU98558 other upstream 1374624 24254739 ~ 24268056 (-) True G66606

Expression Profile