RNA id: XM_043247885.1


Basic Information

Item Value
RNA id XM_043247885.1
length 3820
RNA type mRNA
GC content 0.50
exon number 21
gene id adgrd2
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20592465 ~ 20614297 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGCGCTCACCTCCTTCCCGGAGACACAGAGGATCACACACCAAGGAGGAGGACGGTCTGGAGGAGATGGATTATGGAACGGATATTACACTTGCAGGCTGAAGGATGAAGAGTAAGTGCACATAGATAATATGAGCTAGATATACAGATGCAACTCCACAGCACTGTCCGGACAAGCGCGCGGAGGCCAGGACTCGAAGCGTGGAAGATCATCACATCAGAAGAAGCACAAGGCAGAGCTACCAATACACCTatgTGAAGATGTCCCCGGTGCTCTTTGGAGTGATTTTGGCTAACGCTGTGTTTAAAGGTACGTGTGAACCAACTCAGTCATGGTCGGACAGGGCAGAAAGAGGACTTTGGGACGTGCCAGACTCTCACCTTCTGGTCCAGAAAGATGCAGTGTACCATCTCGTGAACACATCGTTCACTTTCCCAGAAGCTGTGCGTTACTGCCGTGGTCAGTCCAGCAGCCTCCCGACCTCAGGGGTCAAAGAGGACGAGGAAGGGGCCCAGACGTTGCTCTCTAAATCCAGCCTGCGGGGCCCGGTTTGGTTTGAAACCAACAAAAAACAGAACCCGACAACTCATCTGGCTCTTCCTAAACAACAAACGCTCCTCAGAGGGCTATCTTTCACGTCTAAGGAGGGCTACGCGCGTGTGAACGCGTCCTTCCCGCCGCTGTCCGCGGTGAGCGTCTGCTTGCGCGTGCAGTGGGAGCCGCGGCGCGACGACGTGTCCACGGTGTTCTCGTACGCGGCGCGAGCCTTCGTCAATGAATTCCAGCTGCGCGGAAAGACGGACAACAGAAAAGTCCGCCTGGCGCTCCTCGTTCAAGGACAGCATCACGGCTACAAAGCCGAGCTGCCCGTTGACGGAGACTGGCACCACGTCTGTGTCACGTGGCGCTCGAGCGATGGGTTTTGGGCCATTTACGTGGACGGGGAGATGGGAGACTCGGACAAAGGGAAAGCTCGGGGAAATGGAAAGGACATCCACGGAGACGGAATATTTATACTGGGCCAAGACCAGGATACTTTTGGTGGCAATTTCACGGAGCCGTTTTTTGGGAACATGACCGATCTGAGCGTCTGGGACGAAGCTCTGGAGTCAGAGCAGGTGACCGCCCTGCGCACGTGCTCGCAGCTGACCAATCACAGAGCCTTATTCAGGTGGAGCGACTGGACCCTCGCTGTCCACCAGTCCGTCCGGAATGTGTCTGCTGCACTCACCTGTCCAGGGTCCCTGAAGACAACCCAGAAACAGGACGAggactgtgatgtttttagtgGCTGGTCTGACCCTCAGCCTCAGTACAGCACTGCCCCCTGCACACACACGCTCCCCTTCATCTGCAGAGTCagcaaagACCATTATCTGAAGATGAAGGACTTGAAAGAATCTCTGACGTCCGACCCCAGCTCCTTCATGCAAAGTCTCATGCAGTATGGCGTGACCGCAGACGACGTGCTCTCCGATTCTGTGGATGGGCAGAGCTGGACCTCAGTGTCCCGTCTGCTGAGTGTTTCTGAGCAGGTTGTTCTGAAGGAGCAGAAACAGCTGGAGGACAGGGACATGGCCTCTCTGATGCACATTCTCTCTCGGGCCGCTGACCTGCCCAGCACTGCCAACCACAGCCGGCGTGATGCGGAGCAGCTCGGCCAGAGCTTCATCAACCTCGCAGAGTCACTCATCAGCCAAGAAAACCTCAGCAAATGGAACAGCATCAAAGAGGTAGTGAAGGGCCCGATGGCGGTCATGCAGAAGGTGGACCGCATGGTGAGCAACCTTAACTCTCTGCTGATGGACGACACGGACAGTGTGCAGATACACAACAGCAATATCAAGCTGCAGGTCCAGCAGAAGCTGCTGTCTGAAGCTTCTCGTGTTTCTGAGTTTTGTGGGTTGGATGTGGGAAACCATGACTGCATCTCGTTCCCCGCTGAAAACATGAAGGAACTACAGAACAATGGCTTCAAAACGGTGACTTTGCTGAACACATGGTACAGCTCCGTGAAATGCttctcagagagagaggagaacaTTACCCTTTTTCCTATAGTCAGTGATGGATCTCATAGGCACGTGAGAACGGTCTTGGGCTCATCGGTCATCTCCAGTACAGTGCTGGCAGATGGACAGCCAATCAGCATGGCCATAAACTTTACACTCCAGCACAAGATTCAGAACAGTTCACTGAACCTGACACCTATCTGTTCTTTTTGGGATTTTGATCTGATGCCGGAGGGGGGAGGGTGGTCAACAAACGGTTGCACCTCTATTTCCACTAATAATAactcaacttcctgttcctgtaaCCACACTACCAACTTTGCCCTGCTGCTACAGATCTCCGAAGTTCAGctgaATCCTGGTCATGAGACAGGCCTGCAGATCTTCAGTTTGATTGGCTCTAGCGTGTCTCTGTGTGGTCTCATCTTCACATTTATTCTCTTCATGGCTGTTGGCGTTCCCAAGTCAGATCGGACTACAGTTCACAAAAACTTGATTGTGGCGTTGGCTGTAGCTCAGTTGCTTCTTATTTTCAGCAAGTGGGCCGAGGGAAACCAGGAAGCCTGCTGGTTGGTGACGGCGCTCCTGCATCTGTTCTTCCTGTCCTCTTTCTGCTGGATGCTGGTGGAGGGCTTGCTGCTCTGGAGTAAAGTGGTCTCTGTGAACATCAGCGAGGAGAGGCGGATGAAGCTGTACTATGCTCTGGGCTGGGGGCTGCCGGTTGTTATAGTCGCCGTAACCTTGGCAGCCACTTTGGATCAGTATAAAGCGCAGCAGTACTGCTGGCTGAACCTTCAGTCGCATGTTATTTGGGCTTTTGCAGGCCCTGTGCTCTTTGTTTTGGCCGTCAACTCTGTGGTGCTCTTTCGGGTTGTGATGGTCACAGTGGCCAGTGCACGCCGCAGAGCCAAAATGCTGACCCCCAGTTCTGAATCGAAACTTCACGCGCTGGATCTTACCTGGGCAGCGACGAGGCCAGTATTGATCCTGTTACCAGTGTTAGGTCTGACCTGGCTGTGTGGAGTGCTGGTGCATTTATCTGTTGCCGTGGCCTATCTGTTCATCGCACTCAATGCTTTTCAGCTTCATGTAGCTCTCTTGGACTGTCTCGTTCTTCCTCCCATGTCTATAATGAATGAGAGCTGAATTCCCTCCCAGAGCTTGTTAATGTGGATTTACTGTGCGTGTCTGggaaaaagataaaagaagTAGAAGACAGATAGAGAAAATGGGGGAGAGGAGGAGACACATGAGCAGAGTCCATCACTGGAAGGAAACTCTTCTGATATAATTAGCCAGCACAGATATTTCTCGAATGTTTTATGTAGCAGAGGTCTCTGAGAAAAGCAAGTACAAAGACGCAGGAAAAATACGGACCGTTCCTGTTATCTGGAATATATGGCGGATTCAACGCTAACCAACAAGAATAAAACTTGTCCAAAatgtccaaaaacaaaaaaaagtttctcctgtgtgtttatagtaatatattataaataataacacatttgtttattacacCACAGATACTGAATCTTTAGaatgtaatacattataagaaTGGATAATAGaggatattttaaacattatgaaagtgaaattttatgtttattatactacgatttttaatgcacattatttagtttcttttctgttgctttattttttaaaaaacagtcatTGACTGAAACTTACGAACCCTGTTGTGCTCTCTTGTCATTTTATACcctaaaaatgagaaattatcTTGCATACAAACATTATTGTCAATGCATTTCAACACTTTTCCACCTTTCCAAATTCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97126 lncRNA downstream 25940 20567158 ~ 20570293 (-) True G65697
TU97122 lncRNA downstream 36262 20559631 ~ 20559971 (-) True G65696
XR_006251536.1 lncRNA downstream 90260 20494486 ~ 20505973 (-) False LOC122349883
XR_006251535.1 lncRNA downstream 90260 20497495 ~ 20505973 (-) True LOC122349883
TU97115 lncRNA downstream 98920 20493639 ~ 20497313 (-) False LOC122349883
TU97155 lncRNA upstream 104643 20718940 ~ 20721810 (-) False LOC122350336
TU97154 lncRNA upstream 108969 20723266 ~ 20725454 (-) True G65717
TU97177 lncRNA upstream 266725 20881022 ~ 20881433 (-) True G65732
TU97172 lncRNA upstream 271927 20886224 ~ 20892629 (-) True G65728
TU97173 lncRNA upstream 271927 20886224 ~ 20890353 (-) False G65728
XM_043247372.1 mRNA downstream 127328 20465898 ~ 20468905 (-) True chmp4bb
XM_043247019.1 mRNA downstream 132024 20460129 ~ 20464209 (-) True LOC122350494
XM_043247020.1 mRNA downstream 137205 20454630 ~ 20459028 (-) True ywhabb
XM_043247209.1 mRNA downstream 154325 20439262 ~ 20441908 (-) True mak16
XM_043247166.1 mRNA downstream 174937 20417540 ~ 20421296 (-) True LOC122350560
XM_043246940.1 mRNA upstream 47872 20662169 ~ 20664529 (-) False bcl2l16
XM_043246941.1 mRNA upstream 47872 20662169 ~ 20664529 (-) True bcl2l16
XM_043246065.1 mRNA upstream 76533 20690830 ~ 20696690 (-) True si:dkey-90l8.3
XM_043248007.1 mRNA upstream 85726 20700023 ~ 20707196 (-) True ccn1l2
XM_043246721.1 mRNA upstream 104726 20719023 ~ 20723155 (-) True LOC122350336
XR_006251697.1 other downstream 143102 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1163098 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1163098 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1393856 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1556682 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 1157171 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1170407 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1399676 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1414435 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 1450601 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile