RNA id: XM_043247890.1


Basic Information

Item Value
RNA id XM_043247890.1
length 2116
RNA type mRNA
GC content 0.47
exon number 8
gene id vsig8b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 3555598 ~ 3568917 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGGGGGGCGGTGCCTAGGAGGAAACGCCTGTTTACCTGCTTCAGGTGAGAGTGAGAGTCGAATAGAGGAACCAGCAAAGAAAACACCCGAGTTGTTGGATTAGTCTGAGTCTGGTTGCTCCGTCAAGAggttTTCTGTGAGAGAAGCTGACATTTGGCTATGAGCAAGTTCTGCTTTAACTCTCCCTTACCTCTGGCTGCATTATACATCGCTGCAGTATGCCTAAATCATGCAGcTTCGGCCATACAGGTGACATCCAGCGGACCACAGACGGTGAAGAAAGCCCAGGGGGAGAGTATTACTCTGGGATGCACATACACCTTGGATGTTGCAGATGTCGGAGACCTGGACATTGAGTGGACACGCGTCAGTCAAGACATGACCCAGAAAGACGAGCTGATCTTATCCTACACTGGAGGGAAACAGTACCAGCTAGGAAGCCCAGACCTGATGAGTCGTTTTAAGTTTGCTGGAGACCCGAGCGGCGGAGACGCCACGGTCAACTTTTCCAGCCTCAAGGTCTTGGACACGGCCACGTACCAGTGCAAAGTGAAGAAGACGCCCGGCATCGATTCCCGGAAAGTGACTTTAGTAGTGCTGGTGCGACCTTCGCCCCCGAAATGCTGGGTGAAAGGTAGCGAGGAGAAGGGCGGAACGGTTTCGCTCTGCTGCGAATCTTCCCAGGGTTCGTCTCCTCTAAAATATGCATGGACGAAAGAAAGCGGAAACCTGCCACCGACCGCGACGCAGAATCCCCAGACCGGAGAGCTGCTAATCAGAAACCACAGCGACAGCTACACAGGGAGGTACCTCTGTGAGGTCAGCAATGAAGTAGGCTCTGAGCGATGCACATACGCCCTTCAAGCATATAACCCGACCAATAAAGCGGGAGTGATTGCTGGAGCTGTGATTGGtgcactgctgctgctgctcctccTCCTGTTTCTAATCTGGCTCCTGATTTGCTGTTGCAACAAGCGACGCTATGAAAAAGAGGTTGCCAATGAGATCAGGGAGGACGCTGCAGCTCCGGAGAGTCGCCCGGGAAGCCGTAACTCCAGCTTCCGTTCTGTACTGAATTACCGCGTCCATCCTGGGATCCGTTACAGCTCTGTGAGCAAAGCCGATGTCGCACGGGTCGGATCCGGCCGCAGCAGTACCCACACCGAACGAAGCAGAGTCCAAAGAGAAGCCAGCATGCTTGCGTCTGATCACAGGCCCCCGCTCAGATACGACAGCAGATACGGATACCCCGTATAACCACCGAACGTCCTGCCAGGAGACACAGCACTGGAAAGATTAAACCCGCTCAAAAGATGCAATAGTGTGCAAGACCGCGGCAAGACTGGATGACATTAAAACTGCACAGAAGTACATTCACACAAGTGAACGATAGAGATAGGGATCtgctaatgtgtgtgtatagttgtttatgtatttttgtatgattGTTTTATAAGCGTTTAGGTAAAATGTGGTCGTGGtaatcatttgaatatattaagcTAACAAACCTTCTTTATGACCATAAATTCAATCTTTTTAAGAATAGTGATAAAAgaggattttttaaaaacgaGCTTTCGTGCAGCTcatcaatgcagaaaacatTGTACAGAgtattaaatctgaaagtgtaacGTTATTGAAAGAGTATAGACAGAGTTGACTCTGAAGCattgaaatgagtcatttttaaaacgagtcccaagctcGTTCGAATCAAACCTCAGCGTATTCCCgctcacttgttttttttcaggttcgtatgaatgaaaatgtaaattcgtTCTCAAGCACTAGGTGGCGCAAGCTCACgaacactgctttaaatcacCGGAGAGGTTTGGTACAAATCAATcgttgaacgaatcgtttgggagtcactGAACAAATAAGGTCAGAATCAATGTATATTATAAGAAAACGAAAGCGACCTTGCATgtatgtcaacctgttgtttgggactacTAAAAAACGAAATATGAATCGTTCATAATAATAGCGGCACTTTAAAGTGTCATCTGTATGAATGTTTACAACTGTgatatgaattataataataacatgtttTACGAATGTTCACATTTACTCTAGATTAATGCCCCCTGAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89788 lncRNA upstream 469225 3085756 ~ 3086373 (+) True G60673
TU89782 lncRNA upstream 474875 3076876 ~ 3080723 (+) True G60668
TU89775 lncRNA upstream 497752 3056299 ~ 3057846 (+) True G60661
TU89774 lncRNA upstream 499579 3055427 ~ 3056019 (+) True G60660
XR_006251539.1 lncRNA upstream 554616 2998907 ~ 3000982 (+) True LOC122349907
TU89844 lncRNA downstream 577 3569494 ~ 3570284 (+) True G60718
TU89854 lncRNA downstream 10585 3579502 ~ 3579982 (+) True G60728
XR_006251656.1 lncRNA downstream 38398 3607315 ~ 3607977 (+) True LOC122350949
XR_006251655.1 lncRNA downstream 38398 3607315 ~ 3607977 (+) False LOC122350949
TU89876 lncRNA downstream 85844 3654761 ~ 3655932 (+) True G60743
XM_043247953.1 mRNA upstream 29654 3497424 ~ 3525944 (+) True lrrtm4l2
XM_043247952.1 mRNA upstream 29654 3497424 ~ 3525944 (+) False lrrtm4l2
XM_043247559.1 mRNA upstream 521699 3015349 ~ 3033899 (+) True adra1aa
XM_043246714.1 mRNA upstream 602914 2948990 ~ 2952684 (+) True gatd3l
XM_043246712.1 mRNA upstream 608249 2943281 ~ 2947349 (+) True LOC122350330
XM_043247345.1 mRNA downstream 6614 3575531 ~ 3576550 (+) True LOC122350663
XM_043247089.1 mRNA downstream 79085 3648002 ~ 3652067 (+) True nefmb
XM_043247091.1 mRNA downstream 112616 3681533 ~ 3703724 (+) True asic1a
XM_043247097.1 mRNA downstream 135948 3704865 ~ 3711035 (+) True gpd1a
XM_043247098.1 mRNA downstream 157653 3726570 ~ 3737104 (+) True abtb1
TU89218 other upstream 1515762 2037752 ~ 2039836 (+) False LOC122350758
TU89217 other upstream 1519618 2033892 ~ 2035980 (+) True LOC122350053
TU89216 other upstream 1522535 2030878 ~ 2033063 (+) False LOC122350053
TU89212 other upstream 1538078 2014880 ~ 2017520 (+) False polb
TU89150 other upstream 1637227 1915460 ~ 1918371 (+) True G60259
TU89939 other downstream 279697 3848614 ~ 3850557 (+) True G60788
XR_006251567.1 other downstream 355944 3924861 ~ 3931488 (+) False LOC122350109
XR_006251613.1 other downstream 479702 4048619 ~ 4073897 (+) False ccdc120a
TU90648 other downstream 1535653 5104570 ~ 5126254 (+) False LOC122350082
TU90652 other downstream 1535653 5104570 ~ 5263963 (+) True LOC122350082

Expression Profile