RNA id: XM_043247899.1


Basic Information

Item Value
RNA id XM_043247899.1
length 2100
RNA type mRNA
GC content 0.52
exon number 5
gene id efna5b
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 202147 ~ 295270 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGAGCGGCGCTGGGTTCACATCATCACACCTCCCGCCGAACCGAGAGCGAGCGCGTGAGCTGACCGATGACCCCCCGCGCTCCTGCACGTCTCCCGCAGTATAATGACGGAGAGTGACGCGGGCGTGTTCGCCGAGCTCCGCGTTTCCCCGAACGGACTTGTGCGCTGAGATCAGCCCCCGAGCTCCTGCCTCCGCGGGCAACTTCTTCAGATCCCTCGTCTCGGAGCGAGAACGCCGCGCGCCCCGCTCCAGAGTGCGCGAGAAGCGCTTCCGCGGACCCCGTACATGCTATGCGCGTGCTCTGCCAAACCAAACCGACCCGCGTTAGAATGAACCCTGAACACTGAGCGCCtggtttggatttttttttgtttttgtttttgttttgtcgcGTCTCTCCGGTGCGCGGTCCACGAGTATTGACCGTAGTGCGGACATTCACGCCACCGACAGAAGATCTCGGACGTCTCGACACTTGCTCCGCCGTCCGCCGAGCCGCAGATGCGCGTCAAAGTCGACTGAAGCAAGAGGAATATACGAGTCCGAGCGCGCTGTAGCGATGCTGCAAGTGGAAATGGTCATATTCGTGGGTGTGATTCTGTGGATGTGTGTATTTAGTCAAGAGCCCAGCTCAAAGGTGATGGCCGATCGATACGCTGTCTACTGGAACCGAACCAACCCCAGGTTCCACCGCGGAGACTATCACATCGACGTCTGTATAAACGACTACCTGGACGTGTACTGTCCGCACTACGAGGACTCGGTCCCCGAGGAGAGAGCCGAGCGCTACGTGCTCTACATGGTGAACTACGACGGCTACAGCACGTGCGATCACACGGCCAAGGGCTTCAAGCGCTGGGAGTGCAACCGGCCGCATTCCCCCAACGGCCCGCTCAAGTTCTCCGAGAAGTTCCAGCTCTTCACGCCGTTCTCGCTGGGCTTCGAGTTCCGGCCGGGCCGGGAGTATTACTACATCTCCTCCATGATCACAGAAACCGGGAGAAGGTCGTGTCTCAAGCTGAAAGTCTTCGTGAGACCACCGAATGGCTGCGAGAAAACCATAGGCGTTCATGACCGCGTTTTTGTCGATGACAAAGTAGACAATGCATTAGAACCAAGAGACGACACCAGTCACGAGGCCGAACCGTCCCGGAGCGACGTGTCGACTTCAGGCCTGCGGCACCAAACGTCGGGGCCCCTGCTGGCCCTCCTGCTGCTCTGCATCTCTGTGTTCCTCACCTTATAGCCCCTCACCGGCCCCGACTTGAGATCCACCAGGAACACTCCTGCTGcgctttggttttgttttccgATATTTAAGTGGTCCTTCGCTGTCTTTGATTACGAAAAGTCGATTAGCCGTGCAAAGAAGAAACGCAGAGCGCCCGTTTAACCAATCGACCGGCGGCCGGTCGCTGGGGATTGGCTGTTGGGAGGAAGGGGGCGGAGTCTCCGATTTGATTTGGGTCCATTGGGAGCAAGTGGCTCTTTTGTGGGCaattaaagggttttttttaaggtggGTTTCACATAAAACAGACATAAACATCAACCCGAGTTCACCGGCTCTGCTGTTAGcgatattatatatacacaaagacTCTTGCCTTTCGTCCTTCGTCTGCCTTCCCTTAACAAATTGCAGAACGCATCGGAGGAAGCGGTCTGTAATGCGTCTCTCCGCAGGATCTTTCCCAATCCCTGGAAGACGTCGGGTGGTTAGTCTGTATCGGTTAGTCTGAATTTGGATTTGATTCTCTACTGCGATTCGAGGGACTTGTCTTAGTAGACCGcaccactaaaaaaaaaaaacaacaattttgtattttgtaagaTAAACTTAACTGCAacataaatatctatatttttccTATGACCTTTTATCAATTGATATGAGATATCAACATTAACGGATCATGGAAATTCTTTTCTTGTCATAACTGTGACTCTCTATTAGGAACCAAATACAGAAAGGAGCTTAAGGAAGCATTTGTTTGAATAGGCCTTATACTGTACGCTATACTAATATCTCCTGGAAGTGCTTCGAGTTCAGCCTTTCCATCGGGGAAATAAAGTTTAGTCTCATTTGTTGAtttca

Function

GO:

id name namespace
GO:0022407 regulation of cell-cell adhesion biological_process
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0050731 positive regulation of peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0051893 regulation of focal adhesion assembly biological_process
GO:0007399 nervous system development biological_process
GO:0031362 anchored component of external side of plasma membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88197 lncRNA downstream 118294 83574 ~ 83853 (-) True G59654
TU88300 lncRNA upstream 219497 514767 ~ 551882 (-) True G59739
TU88322 lncRNA upstream 250649 545919 ~ 547911 (-) True G59750
TU88788 lncRNA upstream 320011 615281 ~ 617472 (-) True G60016
TU88829 lncRNA upstream 365165 660435 ~ 661098 (-) True G60036
TU88765 lncRNA upstream 427920 723190 ~ 725000 (-) True G60003
XM_043247293.1 mRNA downstream 119119 7 ~ 83028 (-) False LOC122350625
XM_043247017.1 mRNA upstream 67308 362578 ~ 532388 (-) False fbxl17
XM_043247016.1 mRNA upstream 67308 362578 ~ 532374 (-) True fbxl17
XM_043247018.1 mRNA upstream 153251 448521 ~ 532374 (-) False fbxl17
XM_043247950.1 mRNA upstream 262986 558256 ~ 563214 (-) True slc35d2
XM_043247734.1 mRNA upstream 273316 568586 ~ 570967 (-) False ccl27a
TU88755 other upstream 270616 565886 ~ 570973 (-) True ccl27a
TU88852 other upstream 431919 727189 ~ 731620 (-) False LOC122349987
TU88902 other upstream 840131 1135401 ~ 1138152 (-) True G60098
XR_006251689.1 other upstream 845428 1140698 ~ 1159246 (-) True commd10
TU89022 other upstream 1056640 1351910 ~ 1356931 (-) False LOC122350266

Expression Profile