RNA id: XM_043247947.1


Basic Information

Item Value
RNA id XM_043247947.1
length 2397
RNA type mRNA
GC content 0.50
exon number 5
gene id si:dkey-178e17.3
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1837123 ~ 1852539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCCCGCGCGCGCCTCAGATGAAGTTGAGCGATGCTGCTGACGGGACGCGTCTGAAAGCGCTCGGATTCGCGAGAAACTCCCACAAAGCGTCGTCTCCCGTACCGAAGCGACCCCCGAGGACGTTCCGCGAGACGCCGTGATGAAGATGACGACGACGGTGGTAACGCCGGCTTTGACGCGCGTCTGCGCGGTGATCGCGCTCGTGATGTGCGCGTGCGGCGGGTGCGAGGCGGGATGCGCGGACAGACCGGCACCGAGATGCTGCCCGGGACGGAATAACGAGTGCGCGGAGAGGAGCGCGAGGAGGACCGTGTGTTACTGCGACGCGTACTGCCGGAGGAGCGGCGACTGCTGCGACGACTACCAGAGCGCGTGCCACGTCTCAGCTATAGACTGTGAGGTCCGGCAGTGGGGCCCCTGGTCCCCGTGTTCATCCGTCTGTGGGGCAGGGACTACGGAGCGGAGCCGACAGGTAGCCACGCCCCCTCGCAACGGAGGCACGCCCTGCCCCGACCTCAAACAGCGGCGCGGGTGTCTCGCTCACACGGGCACCTGCAGTGCAGCTAAAGaGGTGGCCAAGATCCTGCCTGACTCATTCAAGCGGAACTTCAAGGACCCTTGGAGACGGCCGCACATGCTTATGAAGGAGGAAAAGAAGAGttACTGCGTGCAGATGCGTGTGAAGCAGGCGAGCGCTGCCTGTAAGGTCAAACCGTGGAGCGCCGGCCTGGTTCACGAGCGCTCTGTATGCGTCGAATGTCAGAGTGACGCCATGACGACCGATAACCGCTGCCGTGGCGACGGGCTGCAGAACATCAGAACCTTCTGGTCCGCCGCGTCCGCTCCGGGTTGCTCCGGCTCGTGGGTTCAAGAGTCCTTCACCAAGGACTGCCGGTGTCCATCTTACTCCATGATTTTCATCTGAACCAAAACACACTTTCAAGCTCCTTTCGAGGGACACGGTTGCTTAAAACGATGCATCTGAAGACAAACTCTCTCCATCAAAAGTTAAGCAATTTGTCACTATCCTGTGCCTCCACCGAAACCAGCACACAACCCTGTTCTTCTCAAGCTCTGCTGTCTACCTCCAAAATGCACCTGCACCCGTTTCTGATGCCTTAGATCATAGGTTTCGCTCTGTCCTGTTTTTCTACTCTTTTCTGATCCACACgtactgtatttatatacgTTTGAATGtactcctgtgtgtgtgtgtgtgtgtgtgtaacgttTGCACGTGCTGCGTGTGTTTTGAATGCAAAACCCGTCGCTGAAAGACAAGCTAATGTATATGAATGTTTCGTTTTCTGGAGGAAACCCCTTCTTTTGTTTATTCTCACGTGTCCTGATCTGTGCAAaacgctgcagtgccttacgctttCGCTCGTTTTCCCAAAGTTGCTTCGTTCATGTCGGTTTGCACGATTTGAAGGCTGCGTTCGAAAGCGCGCTCGATCCGTGCGTATCCATTTCGCGTGAAAGCAAAGCGCCCCAAACCGTGGCCAACCACAAACTTGTCCACAACAACGTAAAACCTTTCTCATTGCTGCTCGTCTCAATTGCCCAATgcccaatttatttattatttacagcatCTCTGACTCTTAATACATGATGACTTCCGTGCACACACATAGCAAACCATCAGGACTGCACCAAATATTTTCTAGATTGCAacttcattgtatttttgtctttaagtaacatttcaattgcttttgtatgatttttttttttttgttgccttgTTATTTGCATCCATCACGCATTAAACGGTCATCGTCTCGATGACTTTTCTTTGACTGCTGGCTCTCGGTGTGATCGTGACGCTCTCGCCGCTGTGAGGTGTCTTCAGTCGTAGCGTGTGTTTAGCGTGCATGTGCTCATTACGCATCAAAGGGCTCGTCTCGTTTACACGCACCCGTCTGCACACTACATATATTTTCAGGCATTTTTTGCATGCTTGCTCGGCAGCGTGCTAAGTGCAGTATACTTAAAATTCAGGTGATCGTGTGCTAATGTTGGGTTTGTAGGATGGAATGCGTAAACACGCTTTAAACAGCACTGCTTTACACTTCTGCTTCAATGCATTAAACGACTTTTTGTAAAACTAACCAAAAATGTCAATGTATGAATATCTTTACCACTTATACTTGCATTATGTACTATATAGTGTCTTGAAAACGTAAAAATAGCGCAATCCTATGCGCAATGAACCACGTACCACTTTTACTGTAACTAAGATAGTTTtagtaaaccaaaaaaaatgccAATGTATGGATGtctttgcaaatatattttatatacacacgcacacgcaccactgtatgttttgttttcgtccgaagtacagcaaaaacagaaatgtgaaatatctgtaaaacctgaatacgttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89073 lncRNA downstream 56773 1726225 ~ 1780353 (-) True G60204
TU89101 lncRNA downstream 71583 1717401 ~ 1765543 (-) True LOC122349999
XR_006251551.1 lncRNA downstream 118664 1717401 ~ 1718462 (-) False LOC122349999
TU89102 lncRNA downstream 118664 1717401 ~ 1718462 (-) False LOC122349999
TU89076 lncRNA downstream 142306 1674474 ~ 1694820 (-) True G60207
TU89469 lncRNA upstream 135238 1987773 ~ 1988553 (-) True G60471
TU89471 lncRNA upstream 138800 1991335 ~ 1993098 (-) False G60473
TU89472 lncRNA upstream 138800 1991335 ~ 1994745 (-) True G60473
TU89490 lncRNA upstream 185165 2037700 ~ 2039825 (-) True G60487
TU89547 lncRNA upstream 271523 2124058 ~ 2124341 (-) True G60510
XM_043247344.1 mRNA downstream 15476 1780400 ~ 1821650 (-) True pi4kab
XM_043247343.1 mRNA downstream 59652 1771982 ~ 1777474 (-) True LOC122350661
XM_043246175.1 mRNA downstream 74577 1749062 ~ 1762549 (-) False LOC122349998
XM_043246173.1 mRNA downstream 122905 1710358 ~ 1714221 (-) True LOC122349997
XM_043247525.1 mRNA upstream 5385 1857920 ~ 1878899 (-) True si:dkey-178e17.1
XM_043246946.1 mRNA upstream 28203 1880738 ~ 1926722 (-) True cltcl1
XM_043247048.1 mRNA upstream 75194 1927729 ~ 1936872 (-) True si:dkeyp-117b11.1
XM_043247054.1 mRNA upstream 94606 1947141 ~ 1965053 (-) False plat
XM_043247053.1 mRNA upstream 94606 1947141 ~ 1965053 (-) False plat
TU89063 other downstream 50073 1732864 ~ 1787053 (-) False pi4kab
TU89104 other downstream 81742 1749147 ~ 1755384 (-) False LOC122349998
TU89103 other downstream 83210 1749147 ~ 1753916 (-) True LOC122349998
TU89107 other downstream 85758 1749147 ~ 1751368 (-) False LOC122349998
TU89094 other downstream 232013 1601521 ~ 1605113 (-) False LOC122350657
TU89498 other upstream 206859 2059394 ~ 2061335 (-) False c8h22orf39
TU89500 other upstream 206859 2059394 ~ 2061481 (-) True c8h22orf39
TU89626 other upstream 608396 2460931 ~ 2464371 (-) True G60564
XR_006251678.1 other upstream 671281 2523816 ~ 2552186 (-) False bicdl1
TU89698 other upstream 941599 2794134 ~ 2813107 (-) False rad9b

Expression Profile