RNA id: XM_043247949.1


Basic Information

Item Value
RNA id XM_043247949.1
length 1498
RNA type mRNA
GC content 0.52
exon number 6
gene id snap29
representative False

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1822636 ~ 1827411 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGGAGAGAGGAGGAGCCTGTCTGACGTCACGCCGACGCACACCGGAAGTTGTTTCGGCGTAAGAGTCAGCTGATAGCAGGAGAAACACATCAGCCTCCAGCGATCAAAGGATGTCTGCCTACCCTAAATCCCACAATCCTTTCGCCGACGACGATGATGAAGAGGACTCGAAACCCCGAGGAGGCTTCAACTTCGACGACGATCCGGAGGAGAGCTCCCTGAGCCCCGCGGAGCGACGCCAGAGACAGCTGCAGCAGGAAGTGATGCGCACCGCGCGGTCGGCCGTGGACAGCAGCCACCGCTCGCTCGGACTCGTCTACGAATCAGAGAAGGTCGGAGCGGAGACGGCGGAGGAACTGATTCGTCAGGGCGAGGCTTTGAAGAGGACGGAAAAGATGATCGACAACATGGAGCAGGACATGAGGACGAGCCAGAGGCATATCAACACCATTAAGAGCGTCTGGGGCGGCATGGTCAACTATTTCAAAGGCAAACCTGAACCTCCCAAACCTGCTCAGAAGGACCAGCCCGTCTCCTACGAGGCCAACAGCAGGTTACAGAATGCGCTCACGGAGAGCAAGCAGCAGGAAGACAAATATCAAGCCAGTCATCCCAACCTCAGGAAACTGGACACATCTgGATTCGGAGCGTCCGCTTCGCTGGAGAACGACCCGTCCGATCAGAACGGCTATCCCAAGAACAAACACCTACGGGCCGCCCATCAGCAGCTGGACACGAACCTCGACGAAATGTCTCTGGGTTTGGGTCGCCTGAAGAACCTGGGCCTGGGGCTGCAGGCCGAGATCGACGACCAGGACGTTTCTCTGGACGCTTTGCTCAACAAGGTGGACACCATGGACGGCAAGATCGGCTCCACCAACCGGCAGCTCAAAAACCTCAAATAGACCCTCCCCCCGgggtgatgtcatttcctggaGGCGTGGCCAAAACATCTCTGGCTCTCTGAAAAGATTAGTCGACCCACTGAGAAGTTAAGCGCTCGTTTCAGTTCGGCCTTCGTTTAATCGTCACTTATTCGAGATGGATTGTACATAAGCTCAGAAACGAACACGTTACCCGTAAGAAAAGCATGCTCGAGACATTTCAGTCAGTGCTTTTCCCGATTCACCAGATACCTTGGTTATTACACAACCGTAATACGACCTAGTTTAGAAAAGACACTTTCATAACGGCGTGTCCTAATTTTCCGTTGATGTTTGTATCAGAAACCTGTTGAGTTGCCTTAAAGTTCACCGATTTCAGACGTGGAGCGATTCTCGCTGCATTTCACCGCGCTTCATAGACGAGTCGTGTCCACTAACCTGAGGATGAATGGGGCTTTTACTCGTTTTCTTCTTTTCCGGGTATATATGAGAGTGGCTTTGTATGAAACACCAGAACATGCGTGAGCGTTTCACTATTGTTTCTGCGTCTGTAAATCAAACGTTGTACTCCTGTTAAAGCTGAATGTGAACATGAATAAAACCTTTTCATCGA

Function

GO:

id name namespace
GO:0048730 epidermis morphogenesis biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88732 lncRNA upstream 20593 1800305 ~ 1802086 (+) True G59982
TU88719 lncRNA upstream 40142 1729067 ~ 1782537 (+) True G59969
TU88718 lncRNA upstream 44193 1724561 ~ 1778486 (+) True G59968
TU88716 lncRNA upstream 103580 1711907 ~ 1719099 (+) True G59966
XR_006251537.1 lncRNA upstream 120483 1701712 ~ 1702196 (+) True LOC122349901
TU89128 lncRNA downstream 57837 1885248 ~ 1886439 (+) True G60248
TU89148 lncRNA downstream 81117 1908528 ~ 1911167 (+) True G60258
TU89147 lncRNA downstream 81740 1909151 ~ 1911167 (+) False G60258
TU89162 lncRNA downstream 119737 1947148 ~ 1950296 (+) False G60265
TU89161 lncRNA downstream 119904 1947315 ~ 1950296 (+) True G60265
XM_043246172.1 mRNA upstream 15277 1802695 ~ 1807402 (+) True serpind1
XM_043247341.1 mRNA upstream 173061 1648478 ~ 1649618 (+) True LOC122350660
XM_043247914.1 mRNA upstream 262312 1559120 ~ 1560367 (+) True LOC122351062
XM_043246611.1 mRNA upstream 341125 1456231 ~ 1481554 (+) True LOC122350265
XM_043247074.1 mRNA upstream 556445 1254702 ~ 1266234 (+) False spats2
XM_043247051.1 mRNA downstream 109350 1936761 ~ 1946949 (+) False LOC122350512
XM_043247050.1 mRNA downstream 114246 1941657 ~ 1946949 (+) False LOC122350512
XM_043247049.1 mRNA downstream 114247 1941658 ~ 1946949 (+) True LOC122350512
XM_043247052.1 mRNA downstream 114789 1942200 ~ 1946949 (+) False LOC122350512
XM_043247683.1 mRNA downstream 139172 1966583 ~ 1995859 (+) False ikbkb
XR_006251599.1 other upstream 970675 842077 ~ 852004 (+) True znf608
TU88420 other upstream 1017840 803653 ~ 804839 (+) True G59807
TU88285 other upstream 1282613 537794 ~ 540066 (+) False cdc14b
TU89150 other downstream 88049 1915460 ~ 1918371 (+) True G60259
TU89212 other downstream 187469 2014880 ~ 2017520 (+) False polb
TU89216 other downstream 203467 2030878 ~ 2033063 (+) False LOC122350053
TU89217 other downstream 206481 2033892 ~ 2035980 (+) True LOC122350053
TU89218 other downstream 210341 2037752 ~ 2039836 (+) False LOC122350758

Expression Profile