RNA id: XM_043247976.1


Basic Information

Item Value
RNA id XM_043247976.1
length 2771
RNA type mRNA
GC content 0.45
exon number 12
gene id LOC122351102
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 6679661 ~ 6690661 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGAAATGACGTCACTGTCTCGCGACAAGCGTGCACCTAGAGGACGCCGAGCAGGGCATGGAACACATCGGTGCTTTACTACTGCTGTGGACGTGTGTGTCACGTTTACATCCAACAGAAGGTTTTCCAAGGTGCAGCACGGAGCAGTTTGTGTGTAATAACGGCAGATGTGTGCCTCTGAGTCTTCACTGCGACAGTGTGGATGACTGTGGAGACAGCAGCGATGAGATCTCCTGTTTGAATTGCACTGGTGGTTCCTTCCACTGTGTGGCAGCAGCACGCTGCGTTTCCTCCCACAGTGTCTGCGACGGCAAGCCTGACTGCTCTGATGGAGCAGATGAACTGTTAGACTCATGCTCACAAGCATGCACTAGGTCACAGTTCCGGTGCACAAATGGACGCTGCGTGCCCAATTCAGGGAGGTGTGACAACATCAAAGACTGTGAAGATGGCAGTGATGAAGAGAACTGtgATGACAATGAATGTGAGATCAATAACGGTGGCTGTTCTCATCGGTGTATTGATCTGCCTCTTGGTTTCATGTGCGACTGTCCTAGTGAAATGAGGCTGGTTCTTGACACACACTGTCAGGATGTGGACCACTGTCTTGATTCAGATGTGTGTGATCAAATTTGTGTCCATAACAATGGATCTCTTGCGTGTGAATGTGAGGAAGGGTATGTGCTGACCGCCGGGACTGGAGAGTGCAAGTCTACCGGTGTTGCTGCTCGTGTGGTGGTCAGCACTCTCGAAGGTGTTAAATGGATGGACCTCAGCGGTTCTGAGCAAGGAAACGTCACACATATAAGAGCCCCACCAGGACCCGTTTCTGCCCTTAATGCAAATAACACGTTATACTGGATCATTCCTGAGAATGACATCATCTACAGGATGCCTTTAGACTCCAGTGACTTTAGACCAGCTGTGTTGTTAAAGGCCTCCACAGGCATTCTAGGATTAGCAGTGGACTGGATCCATGAGCTTCTGTACTGGGTCAGTACCAGTACTCATGCTTTACACGTGGCCTCTCTGAATGGCTCCACACAAAGTGAGCTCATCTCTGGGCTCTCCAGACCTACTGCAGTTGCTGTCCATCCGATGCTAGGGTACGTGTTCTGGGCAGATAGTGCAGCGCTTCCCAAAATTGAGCGTGCCAGTTTGGATGGGACAAGCAGAATAGCGCTGATAACTTCATCAATACGTGATCCTGTCGCCATCTCTTTGGatATCCCTCGTGGTCTGCTGTATTGGGCTGACTCTGGTCTGCGCATAATATCAAGAGTTGCATTTGATGGGCAGCATAGAAAGACAATTGTAGAGTCCAACGGGTATCTAGATCGACCGTTTGGACTGGCCATATTTGAGAGTCGAGTGTACTGGAGTGACCAGGTGACCAACTCTATTTGTAGTGCTGACAAACACAATGGCAACATGCTCCAGGTTTCTCAGAGACTGGGTTCTGTTTCACCAGCTGGACTGGTCATCCTTCACCCACTGTTACAGGCTGCAGgcAATGATGTGTTGCAGTCTGAAACAAGAAAAACTTTTCCAGTTTCACAATTTGCTTGGCTCCTCTCACTCACTGTCATCGTCAGTTTGCTGTTAGTGGGGGCGGTGATATGGCAGCAGAGGTCTGAATTCTGTGCCCCTCGTTCTATGTCTCATCTTGGAGACGAGACACTTAAAGAATCCCAGGATCCTCTTCTGTTATCCAGACTGCCTGTAATACATGAGAATAAATTTCCTGATATTTTCAAAGTGCCATAGACGATTGCTTGTGTTTTCAGGATGGCACACAGAATGGTGCAACGCACTGCCATGGACATGGGGTTTTCCTGTAAAAGGACCTCTGTGTTTCCTGTGATGGAAATTACCACCCCCATTTCCTGTTGTCAACTGAAGCGAGGCAGACAATCATCCTACTTGCAGACACATCctactgcagaaaaaaaacgctCTTAAATGCTTTCCAGATGTCTGTTTATGATTTGATAATCACAGAACTAGTCAAATTAAGCATTCAGTGAACTCTTTTAGTTCTTTAATAGAATTGTATCGGCCTGAATACCTTTTCATTTTACTCTTTAAATCTGGGCGTTCCACTTTGACACAGAACAACAAaatgtcatcatcatcattgtgTTGTGAGTTCCAGGTCAATAAATAATTGACCGTGTTATATGGTATTAACTGTGCTGTTAGTCATTACATGACATTTCTGACTTTCAAGCTCGTTTTAAGGTGATGGGATAAGTGGCAAATGTCCATTCACTGTCGAATTTATAGATGCACAAGTTGACCAATCGTGTcttttgtatgtgtgcataGAGACAAAATCAGTGTggaacatattttatttagagaTTGACGGGTGCTGTTAATGCTTTAGAGCAGGGGTGTCAAATTCAGTTCCTGGTTGGCCGCAGCACTTAAGAGTTTTGCTCCAACACAAAACCTGAGAACATGATCATCTCGATAGGGTGTGTTTAAGCAGGCTTGACTTTGGCCATCCAGAAATGGAAGTCTGATAATCCCTGCTTTAGACTAAATTAAGAGTTATTTATGTAAGCAGAGAAAACAATGCTATttattcattgtgtgtgtggttcGGATCACTTTCCAGTTCTCTTTACGTTGCAGTGTTGAAACTGTAAAACAGGTTTTTGCTGTCCTTTATGATTGTatatagtttgaaaaaaaaaaaatgggttgaATGCTTTTAATGACTCATGGTAAAGGGCTTGATGGAATAAAATGCAAGTTGGAAATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91286 lncRNA downstream 21377 6657498 ~ 6658284 (-) True G61663
TU91262 lncRNA downstream 117743 6561450 ~ 6561918 (-) True G61640
TU91251 lncRNA downstream 127950 6551404 ~ 6551711 (-) True G61629
TU91181 lncRNA downstream 211245 6467953 ~ 6468416 (-) True G61582
XR_006251622.1 lncRNA downstream 404451 6273884 ~ 6275210 (-) True LOC122350799
TU91452 lncRNA upstream 171367 6862028 ~ 6862954 (-) True G61782
TU91454 lncRNA upstream 326929 7017590 ~ 7056420 (-) False xpr1a
TU91585 lncRNA upstream 583929 7274590 ~ 7281165 (-) True G61860
TU91592 lncRNA upstream 615451 7306112 ~ 7308340 (-) True G61865
XR_006251630.1 lncRNA upstream 687094 7377755 ~ 7378459 (-) True LOC122350886
XM_043247585.1 mRNA downstream 1508 6670280 ~ 6678153 (-) True b3gnt3.4
XM_043247725.1 mRNA downstream 36338 6636743 ~ 6643323 (-) True ccdc124
XM_043247971.1 mRNA downstream 45277 6609597 ~ 6634384 (-) False kcnn1b
XM_043247970.1 mRNA downstream 45282 6603068 ~ 6634379 (-) False kcnn1b
XM_043247269.1 mRNA upstream 13387 6704048 ~ 6709965 (-) True cabp4
XM_043247270.1 mRNA upstream 13387 6704048 ~ 6709950 (-) False cabp4
XM_043247842.1 mRNA upstream 67543 6758204 ~ 6764605 (-) True serping1
XM_043247350.1 mRNA upstream 76305 6766966 ~ 6770484 (-) True igf3
XM_043247844.1 mRNA upstream 80511 6771172 ~ 6774736 (-) False si:dkeyp-110g5.4
TU91179 other downstream 236679 6431032 ~ 6442982 (-) False LOC122350671
TU91112 other downstream 754314 5919961 ~ 5925347 (-) False LOC122350596
TU91084 other downstream 1061997 5614329 ~ 5617664 (-) True G61513
XR_006251542.1 other downstream 1070091 5605562 ~ 5609570 (-) False c8h9orf116
XR_006251650.1 other downstream 1168718 5476213 ~ 5510943 (-) False pip5k1bb
TU91442 other upstream 123827 6814488 ~ 6816724 (-) False LOC122350104
TU91479 other upstream 404237 7094898 ~ 7100932 (-) False lhx4
XR_006251629.1 other upstream 987755 7678416 ~ 7687562 (-) False spata6
TU91784 other upstream 1426347 8117008 ~ 8217417 (-) False LOC122350139
XR_006251596.1 other upstream 1701684 8392345 ~ 8416553 (-) False eps15

Expression Profile