RNA id: XM_043248007.1


Basic Information

Item Value
RNA id XM_043248007.1
length 2315
RNA type mRNA
GC content 0.50
exon number 5
gene id ccn1l2
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 20700023 ~ 20707196 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctctcgctctctctctctctcgctctctctcgctcactctATAAGGTGACCTGCCTCTCTGGAAATGCTCTGACAAGGCATCTGCATCTGCATTTGAGTCTTgctatagttttagtttagtaacTAATCTTATTGATGCACTGGATAACTGGACTATCTTTGGAGCATTTGCTCTGAGGTCTTTGGAGTCATTTAGAATAAAAGTGGATAAACCTGCTTTTGCACTGGggatttttacttgtttttttttttggttttttccaTTGGGATTCATCTTTTGAAGAGCATGGAAATGTGTTCTGGAAGGAATCGGAGGAGTCTTGCTGCTGTTTGCACCATGTTGATGTTTGTCGTATGTTCAGCTGAAGGAGAGGCGTCCAGAGGCTGTTCCCGGCCCTGCTCCTGCCCCCCGTCTCCACCCTCCTGTCCGCTCGGAGTGAGCTGGGTGCCGGACGAGTGCGGCTGCTGTAAGGTGTGCGCCCAGCAGTTCAACCAGGACTGTGGCCCCGACCGACCCTGTGACCACATCAAGGGCCTGCGCTGCCACCTAGGGGCCGGAGGGGACCCTCGACGGGGGCTCTGCAGAGCTGAGGCTCAGGGCCGTCCGTGTGAGTTTGCCGGTCGAGTGTATCAGCACGGGGAGGATTTCCAGCCCGGCTGTCAGCACCAGTGCAGCTGTATGGATGGCGTGGTGGGCTGTATGCCCCTGTGTCCACACAACATCCCCCTGCCCCGCAGACACTGCTCCAACCCGCGTCTGGAGACGCCGCCGGGGCGCTGCTGTGAGGAGTGGATGTGTGACGATGACAACAGCATCGGGGAAGACCCAGCCGACCCCCGTCCCGATCACAGCCCGTCCAACCACATCAGCAAGCTCATACAGGGCCCTAACAGTGTCCTCACCCGCAGGGGATCCTCTCaagAGTGGACGTCTCTGCCGGTGTCTCGGGTTCCCTTCCCATCATCCAAATGTTTCCCACAGACCACGGACTGGTCCGATTGCTCTGCTTCCTGCGGGTTCGGCGTCTCGAGTCGTGTGACCAACAACAATGGCCAGTGCAAGCTTGTTCGAGAGACTCGGCTTTGCCAGATCCGAGAGTGTGACATCGCTCCAGCTATGAAGAAAGGAAAGACGTGCAGGAAAGCGGTGAGGTCTCGGGAACCGGAGCGGATCACGTTCGCCGGCTGCTCCACGGCCCGCCGCTACCGGCCCCGCAGCTGCGGCTCGTGCGTGGACGGCAGGTGCTGTCGGCCCTCCTCGTCCCGCACGGTGCGCCTGCGCTTCCTCTGCCCCGACGGAGAGAGCATCGCGCGCAACTTCATGTGGATCCAGCGCTGCCGCTGCAGCAGGAGCTTCTGTGGggctcagagagagagatcctCGCCCGCCGTCAGCCTTCACAACGACATACACACCTTCCctcgctgaacacacacacacacacactacacggCTAAACGCTTCTCACTCTCAGAGGACGTTCCTGAACTGTAGAATAGTAAACTGTACTAGACTGTATATAGTTTTTGCACTTTATGCGTTCCTCCTTTTCTTTGAGCTGGACTTTTCTCATGAAAACAGGCCCAGGTCACTCTTCTTGAGGATCCGTCAAAAGGCATTGTTAGCTgtctttctgcttttatttattccGTTATTTTTAAACCCCAAGTGTTTCTTGTATCTTGAAGGACAAGCGGTTTATTTCAGATGAATGACTTCCCGTCACTCGATGGGTAAGAGAATGCACTAGTGATGAGGGCGGTGAGATATTACCTGGTTAAGGGAGAAAATCAagactttttgaaaaaaaaaaaaaaataaataaaaaaattgtctggtaaagtaaaaattgttgtgttgttttcagaaaaaccaAGTTAAATTTGAGTGAGCTTTTGCATCAAACAATGATCTGCCAACGAGGGAAGCTGAATAATCTTGCATTTGAagtaagattattttgcttaccccattcattttgacttgttttgaaattttttcttgatttaagacAAAAATTGCAGTGTACTCGAATTTTAAGGTGCACAGATGTCTTTCGCAATTTTCATGAGTTAACGTGTGGAGCGAAGCAGGACAGAGATGAGTGTGAGCGGACGGCGTTGTCTTTTGTACAGTGTACAGGCTTCACTATAGGTGGAGTGACTCTTTGAGACTGCTTCATTTTTCGGGGCATGCTTTAAATTCTAGACGCTCTCTTGTATAGGAGTAAACGACTATTTGTATAGTTAAGATATTGAATATAAATGACTTTGCTGGTCCGTTtgtgttacaaaaaataaaacattttcaaaag

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005520 insulin-like growth factor binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97135 lncRNA downstream 89100 20610562 ~ 20610923 (-) False G65704
TU97136 lncRNA downstream 89100 20610562 ~ 20610923 (-) True G65704
TU97126 lncRNA downstream 129730 20567158 ~ 20570293 (-) True G65697
TU97122 lncRNA downstream 140052 20559631 ~ 20559971 (-) True G65696
XR_006251535.1 lncRNA downstream 194050 20497495 ~ 20505973 (-) True LOC122349883
TU97155 lncRNA upstream 11744 20718940 ~ 20721810 (-) False LOC122350336
TU97154 lncRNA upstream 16070 20723266 ~ 20725454 (-) True G65717
TU97177 lncRNA upstream 173826 20881022 ~ 20881433 (-) True G65732
TU97172 lncRNA upstream 179028 20886224 ~ 20892629 (-) True G65728
TU97173 lncRNA upstream 179028 20886224 ~ 20890353 (-) False G65728
XM_043246065.1 mRNA downstream 3333 20690830 ~ 20696690 (-) True si:dkey-90l8.3
XM_043246940.1 mRNA downstream 35494 20662169 ~ 20664529 (-) False bcl2l16
XM_043246941.1 mRNA downstream 35494 20662169 ~ 20664529 (-) True bcl2l16
XM_043247883.1 mRNA downstream 85726 20592465 ~ 20614297 (-) True adgrd2
XM_043246721.1 mRNA upstream 11827 20719023 ~ 20723155 (-) True LOC122350336
XM_043246719.1 mRNA upstream 41243 20748439 ~ 20756847 (-) True stambpb
XM_043247158.1 mRNA upstream 50612 20757808 ~ 20762487 (-) True tgoln2
XM_043247598.1 mRNA upstream 64497 20771693 ~ 20822051 (-) True tcf7l1b
XM_043247599.1 mRNA upstream 64497 20771693 ~ 20821267 (-) False tcf7l1b
XR_006251697.1 other downstream 246892 20453031 ~ 20453131 (-) True LOC122351134
TU96506 other downstream 1266888 19428746 ~ 19433135 (-) False si:ch211-218o21.4
TU96509 other downstream 1266888 19428746 ~ 19433135 (-) True si:ch211-218o21.4
XR_006251696.1 other downstream 1497646 19202277 ~ 19202377 (-) True LOC122351133
TU96415 other downstream 1660472 19030987 ~ 19039551 (-) False LOC122350102
TU97752 other upstream 1064272 21771468 ~ 21776620 (-) True G66086
TU97757 other upstream 1077508 21784704 ~ 22254189 (-) True G66090
TU97796 other upstream 1306777 22013973 ~ 22025791 (-) True G66119
TU97791 other upstream 1321536 22028732 ~ 22031993 (-) True G66116
TU97805 other upstream 1357702 22064898 ~ 22068757 (-) False LOC122350973

Expression Profile