RNA id: XR_006251559.1


Basic Information

Item Value
RNA id XR_006251559.1
length 2580
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id LOC122350073
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 1650920 ~ 1655010 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tctcaacaaaaGATAGTGCTTAGTTTTGATATAGCCTTCCAATAATGTTCTAAGCATTTTGTGCATACAGTACTTCAGTTACGGCCCTCTGCTCTTTATTTATTGACCTTTTTCACATTGAGGTACATTCAATCTCAGTCAAAGCACCATATAGTCTCTGATGGCAGTTTCAGGACATCAGTCTCAGACTGGTTCCCCTACCTTCACTACATCTAAGCTCCATCCTAGCAAATGCATAACCTCACCACTAACTAACCTAAGCCCTCCCTGTCTTGTTCtgtttccttgtgttttattttcttctgtattcACAAACAGACCTGTAGAGCACGTGTACTGAATGAGTCACAGTGTGCTTGTCTTTAATTCTGTACAGGTGTGTCTCATTGATAAACCTGTTCTACAAGGCTGTTTATGAATTTCTAAGATATCATTCTGTTTACTCTAGTTATACCatcaaccttttatttttacccaTTTGCCTTCTCCAATTCTTCCATCATAGAAAGGACCAGAATTTTAGGCCTTTATCAGGGGTATTgctgttttgctattttatgcaaatgaaagcAAGTCTGTAGGAGATTGATTTAGTCTTTACAATAACATCCATACATATCCTACAccacgttttaaaatgttttatgtaagttTTGATTCCCTTTTCCAAccaatacacacataaacatccaCATAAACTCAactgaatataaaaatcaaaatagAGCAATCAACATTAACAAAACGCCCTGAAGCTATAGTGCTGGACATCGATTATAAATCAGGAACACCAATGCAGAGGTTGGATCAGCTCTCTTACAgcatcatgtgtgtgtttgatgcacaataaaaacactcatctgtgtgtgttttccctcTCAGCGCTGCCAAAGCACTGAATCTGGCCAAATTCAAGGTGAAAAGCTGTGGAGTGAGTGAACTGGAGAAAGAGggtatgtgaaatattacagcttttaCATATTCTGTAATTCCTGAAGAAAATAGCAGTCCTtgacagaataaagaaaaatacattcttaTGATTTAGactcagaattatttttttccctcgcaattaatgatatatgatataggTGATATATCTTACTctgagaattaaaatgaaaaatgttttaagaattttaaacgttcaaaattaatatattagttattattttcgTTTTCATTAGTGTTGTAACACCGAGTTTGGGTTCATgttcatgtcttttattttgtaatctgtttttctcttgttctctgCCTGGTGTGTGTGTCATGTTCTCACTGGTCCTCTTGTTTactgtgttctgattggttatGCTAGTAATCGTGTCATCTTCTGTTTGATATCAGATCTGCGACTTTTTATTGGATATTGTTTAACTTTCTCACACATTCTCAGATGGTATTGCTGGTATGAAAGGGAAGCAGTGCACAACTGCAAATGCTTTTATCTCTTTGTGATGGCTTTACAACTTAAATAGCGCACCACTTTAGCTGCTTGTGAGCGGAAATGAGCACGGAAGTGGGTGGAGACAAAGCCGACATATTGTAACCGCTTCAGTGTATTTAGTCATTACCATTTGATGAACAACGCAGGCTGACGTTTGATTATCTCCTCTCGTAGAATTTTCTAGAAACCTAATCTTTTTTACAGCAAGTCTACAGACGCAAAAGATATGCCATTACTAAACAGGTCTAGATCTGAACCAACCACCACCGAAAACTCGCCAGCTTGGATTTTGTCAAACATGCGGCAATGGATGAGTCCCGTGAGAGAGGTACTGAGGCCTGTTTCATTGGTGTTCCGGAGCATTGAGGCAGTCAACCAGATTTATACAGcctCAGTGACGGAGCACATTATTGATGGGAAGCTTCTCTAAGCCATCAGTCAGATGCGTCACAAAACCTCTTGAAGAGTATTAAACTGGAAGGATAGTAAGTAATCTCCATGATAAAGATGCTTTGCGATATTTGACTTACTCTTCTGTTCTGTGGGATTTGTTTTCTAGCTGATATCTTGCGAGCAGCTGgagcatttgtttgaaagatCATTGTTTCTTTCTCGGATCCAGCGAAGGATTTCTACATGCTGCCATTTGACTTCAACATCTCCCAGTCATTAAAAAGTACTAGAAACACTCAGTGCACAAACAAACTCAGACCATCACGTATCCCACCCAACCAAAACAGATCAGTTCAGATCAGATCAACATCCAAAAAAATCTGACAATACTGATACATTGCTCCAACAGCATTTGTAACAAATCACAGTTCACAACATACAAGCACAATATGACTCATTCAATATATGTGTGTCCCTTTATCATAAGTTATGCTATGAATTCCCCTAAGCTCCCAGGCTGTATAAAACATCCTCAGTCCAGCCCTGTTATACTAACCAGTGTTTAGTTCTTGAAACCTTCCCATAAGTACCTTTAGTAAGTTTGGctacatatgtatttttaagaacatGGAGACCTCTTGTGGCTGGATGAAGTTACTGCATCAAAACACTGCTCCTCCTGTAGTGTGCAGCTGTAAGTGAACACTGTAAGTAAAGAGATCACTTGCTCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89086 lncRNA downstream 106791 1542446 ~ 1544129 (-) True G60217
TU89043 lncRNA downstream 136625 1457970 ~ 1514295 (-) True G60199
TU89034 lncRNA downstream 157760 1399728 ~ 1493160 (-) False G60198
TU89032 lncRNA downstream 157760 1401489 ~ 1493160 (-) False G60198
TU89033 lncRNA downstream 157760 1401489 ~ 1493160 (-) False G60198
XR_006251560.1 lncRNA upstream 2728 1657738 ~ 1659992 (-) True LOC122350074
TU89078 lncRNA upstream 6479 1661489 ~ 1671766 (-) True G60209
XR_006251558.1 lncRNA upstream 9292 1664302 ~ 1666989 (-) True LOC122350072
TU89083 lncRNA upstream 18506 1673516 ~ 1684040 (-) True G60214
TU89076 lncRNA upstream 19464 1674474 ~ 1694820 (-) True G60207
XM_043247340.1 mRNA downstream 4558 1627653 ~ 1646362 (-) True LOC122350659
XM_043247339.1 mRNA downstream 44311 1561546 ~ 1606609 (-) True LOC122350657
XM_043247249.1 mRNA downstream 127456 1494505 ~ 1523464 (-) True dtx1
XM_043246610.1 mRNA downstream 196390 1447000 ~ 1454530 (-) True LOC122350264
XM_043246612.1 mRNA downstream 293967 1349171 ~ 1356953 (-) True LOC122350266
XM_043246173.1 mRNA upstream 55348 1710358 ~ 1714221 (-) True LOC122349997
XM_043246174.1 mRNA upstream 55350 1710360 ~ 1714216 (-) False LOC122349997
XM_043246175.1 mRNA upstream 94052 1749062 ~ 1762549 (-) False LOC122349998
XM_043247343.1 mRNA upstream 116972 1771982 ~ 1777474 (-) True LOC122350661
XM_043247344.1 mRNA upstream 125390 1780400 ~ 1821650 (-) True pi4kab
TU89094 other downstream 45807 1601521 ~ 1605113 (-) False LOC122350657
TU89090 other downstream 70304 1576805 ~ 1580616 (-) False G60220
TU89089 other downstream 72176 1576805 ~ 1578744 (-) True G60220
TU89022 other downstream 293989 1351910 ~ 1356931 (-) False LOC122350266
XR_006251689.1 other downstream 491674 1140698 ~ 1159246 (-) True commd10
TU89063 other upstream 77854 1732864 ~ 1787053 (-) False pi4kab
TU89103 other upstream 94137 1749147 ~ 1753916 (-) True LOC122349998
TU89104 other upstream 94137 1749147 ~ 1755384 (-) False LOC122349998
TU89107 other upstream 94137 1749147 ~ 1751368 (-) False LOC122349998
TU89498 other upstream 404384 2059394 ~ 2061335 (-) False c8h22orf39

Expression Profile