RNA id: XR_006251648.1


Basic Information

Item Value
RNA id XR_006251648.1
length 324
lncRNA type intronic
GC content 0.42
exon number 4
gene id LOC122350915
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 23230043 ~ 23231024 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGGGTATACTTAAAGTCATGGACCTAagttttgttgttatattaagTGTCTCTGTTATGTGCTGTgaagcattcatttataaatgtcttttctttgtttgtttagatttgGTCATTGAGCTTTATCTCTGGAGCAATTCTTGagCATTACGAGCACTACAAATTCTCCACTGCACAATATCCaATCTATTCAAAGAACAACCTACATTCTTCTCTGCAGTTGAACGCCTGGTTTGGGATTTTCTCAGAGCAGCAGTTCTTCTGTATTGTTCTCCACCCCACACCCACCCCCACTCCCCAAACACCCAACCCCGCCCCTAACACc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98064 lncRNA upstream 243085 22984040 ~ 22986958 (+) False mfn2
TU98062 lncRNA upstream 304275 22899436 ~ 22925768 (+) False wrap73
XR_006251621.1 lncRNA upstream 318661 22909647 ~ 22911382 (+) True LOC122350789
TU98027 lncRNA upstream 429889 22799639 ~ 22800154 (+) True G66261
TU97971 lncRNA upstream 502599 22724582 ~ 22727444 (+) True fkbp1aa
XR_006251646.1 lncRNA downstream 540 23231564 ~ 23239812 (+) True LOC122350913
TU98170 lncRNA downstream 6953 23237977 ~ 23238253 (+) True G66344
TU98171 lncRNA downstream 173984 23405008 ~ 23405312 (+) False LOC122350936
TU98176 lncRNA downstream 201785 23432809 ~ 23433745 (+) True G66350
TU98180 lncRNA downstream 203094 23434118 ~ 23435033 (+) True G66351
XM_043247463.1 mRNA upstream 242881 22973995 ~ 22987162 (+) True mfn2
XM_043247808.1 mRNA upstream 261070 22956869 ~ 22968973 (+) True plod1a
XM_043246224.1 mRNA upstream 283889 22944210 ~ 22946154 (+) True LOC122350040
XM_043247503.1 mRNA upstream 305110 22915891 ~ 22924933 (+) True wrap73
XM_043247710.1 mRNA downstream 172689 23403713 ~ 23410561 (+) True LOC122350936
XM_043247581.1 mRNA downstream 191648 23422672 ~ 23423662 (+) True nppal
XM_043246370.1 mRNA downstream 194884 23425908 ~ 23427204 (+) True nppb
XM_043246265.1 mRNA downstream 197891 23428915 ~ 23430926 (+) True nppa
XM_043247716.1 mRNA downstream 216167 23447191 ~ 23456783 (+) True mthfr
TU98168 other upstream 78096 23054626 ~ 23151947 (+) False prdm16
TU98063 other upstream 244459 22984040 ~ 22985584 (+) False mfn2
TU97654 other upstream 1109247 22119913 ~ 22120796 (+) True G66011
TU97652 other upstream 1112209 22116283 ~ 22117834 (+) True G66010
TU97627 other upstream 1265485 21963514 ~ 21964558 (+) False LOC122350768
TU98282 other downstream 401359 23632383 ~ 23634065 (+) False ndufa7
TU98369 other downstream 521544 23752568 ~ 23783631 (+) False acot7
TU98363 other downstream 522437 23753461 ~ 23783631 (+) False acot7
TU98365 other downstream 522437 23753461 ~ 23783631 (+) False acot7
TU98371 other downstream 524667 23755691 ~ 23783631 (+) False acot7

Expression Profile