RNA id: XR_006251666.1


Basic Information

Item Value
RNA id XR_006251666.1
length 277
lncRNA type inter_gene
GC content 0.52
exon number 3
gene id LOC122350974
representative True

Chromosome Information

Item Value
chromosome id NC_056706.1
NCBI id CM032075.1
chromosome length 24299999
location 22073687 ~ 22074471 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCATGTCTAAATATCCAGCTGATAATTCAAGACttctttttgttctctttttgcAGATCTGTGTACCTGGAAGAGCAAAGAAGGGAGTTTCATAGTTTACCTCAGTCATGCAGAAGGCAGGGACGGCCCCGTCCTCCCGGGGTCCAAGCGCTCCTGGGTCCCCAGCCACCTCCATTGTGGCGCGGATGGACAATCAGGTCATTGGATACAAAGACTTGGCCGCCATCCCCAAAGACAAAGCCATTCTCGAGGTGGAGCGGCCAGATCTGATGGTGT

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU97806 lncRNA downstream 4930 22064898 ~ 22068757 (-) True LOC122350973
TU97807 lncRNA downstream 4930 22064898 ~ 22068757 (-) False LOC122350973
TU97789 lncRNA downstream 60009 22010643 ~ 22013678 (-) True G66115
TU97735 lncRNA downstream 320072 21751768 ~ 21753615 (-) True G66071
TU97707 lncRNA downstream 429004 21571117 ~ 21644683 (-) True G66046
TU97817 lncRNA upstream 218968 22293439 ~ 22295953 (-) True G66131
TU97838 lncRNA upstream 290430 22364901 ~ 22365113 (-) True G66143
TU97837 lncRNA upstream 290805 22365276 ~ 22365682 (-) True G66142
TU97845 lncRNA upstream 302439 22376910 ~ 22378639 (-) True G66147
TU97871 lncRNA upstream 311611 22386082 ~ 22387783 (-) True G66163
XM_043247763.1 mRNA downstream 6358 22060015 ~ 22067329 (-) False LOC122350973
XM_043247797.1 mRNA downstream 19312 22040071 ~ 22054375 (-) True LOC122350992
XM_043247262.1 mRNA downstream 130270 21923712 ~ 21943417 (-) False kansl3
XM_043246221.1 mRNA upstream 539 22075010 ~ 22110087 (-) True antxr1a
XM_043246010.1 mRNA upstream 71052 22145523 ~ 22146997 (-) True LOC122349886
XM_043245990.1 mRNA upstream 85515 22159986 ~ 22161558 (-) True LOC122349876
XM_043247911.1 mRNA upstream 168731 22243202 ~ 22265861 (-) True gfpt1
XM_043246626.1 mRNA upstream 208878 22283349 ~ 22290847 (-) True naa35
TU97805 other downstream 4930 22064898 ~ 22068757 (-) False LOC122350973
TU97791 other downstream 41694 22028732 ~ 22031993 (-) True G66116
TU97796 other downstream 47896 22013973 ~ 22025791 (-) True G66119
TU97752 other downstream 297067 21771468 ~ 21776620 (-) True G66086
XR_006251697.1 other downstream 1620556 20453031 ~ 20453131 (-) True LOC122351134
TU97809 other upstream 4980 22079451 ~ 22097808 (-) False antxr1a
TU97810 other upstream 7550 22082021 ~ 22096062 (-) False antxr1a
TU97793 other upstream 186768 22261239 ~ 22265815 (-) False gfpt1
TU97794 other upstream 186914 22261385 ~ 22265815 (-) False gfpt1
XR_006251538.1 other upstream 562804 22637275 ~ 22640307 (-) True LOC122349902

Expression Profile