RNA id: TU186191


Basic Information

Item Value
RNA id TU186191
length 562
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G137627
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 193309 ~ 193938 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tctcctccaccagtcttacacactgcttttggataacgttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccagaggattttaatttagTCAAAGAAACTTAGCAGCTAAGTGCTCTCTCTtactctaattcttctcttctctgctaaaactgagactcagtccttaatcatgacgtcttcctgtagcagttttttttctccagttttcacCATGCAGTTCCAGCAGTAATTTACTACAGACTAAGAGTTTGGAAATTCACATTATTACGTCCTTTTTTTTAAGTCCATATTATTCCCcttgtttttcagtttattgCTAATTTATaccattttagttttttctctgGACCTGaggagcttaaatggcaaaaataaacaaaaaaactgtggtTGTTCTAtaacttttgaccggtagtgtATAAATATGGAATACCTGCTTCTGCCCTTTGCCAACTACAAtttataaaaagtatataaataataaaacaatgataaatgctaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186208 lncRNA upstream 16671 175080 ~ 176638 (+) True G137639
TU186195 lncRNA upstream 63070 127102 ~ 130239 (+) True G137629
TU186197 lncRNA upstream 64610 128168 ~ 128699 (+) True G137630
TU186164 lncRNA upstream 98736 93285 ~ 94573 (+) False G137614
TU186132 lncRNA upstream 124447 55706 ~ 68862 (+) True G137596
TU186264 lncRNA downstream 149998 343868 ~ 357819 (+) True G137669
TU186265 lncRNA downstream 152855 346725 ~ 354561 (+) True G137670
TU186349 lncRNA downstream 332378 526248 ~ 527067 (+) True G137725
TU186354 lncRNA downstream 460351 654221 ~ 654449 (+) True G137729
TU186362 lncRNA downstream 555971 749841 ~ 750410 (+) True G137737
XM_022677734.1 mRNA upstream 312 177663 ~ 192997 (+) True dars2
XM_007235358.3 mRNA upstream 20260 161857 ~ 173049 (+) True klhl20
XM_007235353.3 mRNA upstream 107198 75683 ~ 86111 (+) True LOC103047317
XM_007235354.3 mRNA upstream 107198 75683 ~ 86111 (+) False LOC103047317
XM_022677731.1 mRNA upstream 152561 31377 ~ 40748 (+) True LOC103023540
XM_022677736.1 mRNA downstream 244828 438698 ~ 694723 (+) True astn1
XM_022677737.1 mRNA downstream 244828 438698 ~ 694723 (+) False astn1
XM_022677739.1 mRNA downstream 244829 438699 ~ 694723 (+) False astn1
XM_022677738.1 mRNA downstream 244829 438699 ~ 694723 (+) False astn1
XM_022677740.1 mRNA downstream 244829 438699 ~ 694723 (+) False astn1
TU186165 other upstream 98736 93285 ~ 94573 (+) True G137614
XR_002651002.1 other downstream 568846 762716 ~ 781196 (+) False rfwd2
TU186393 other downstream 787110 980980 ~ 988638 (+) True G137756
TU186409 other downstream 843999 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 1303429 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 1433085 1626955 ~ 1638255 (+) True LOC111194189

Expression Profile