RNA id: TU186195


Basic Information

Item Value
RNA id TU186195
length 421
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G137629
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 127102 ~ 130239 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gatttatttgGACACATTCAGTAAAAACCGGCAGGTTCAGGGAGAAGAACCAAGATCTTCTTCTCTTCTGGTGGTGCTTCTATCAGATCCACCGGTTCCATCAGGTTCTCCACCCACAGGTTCTAGATCTCCATCAGCTGATCCGACCCAACGATCACGTCATTGGTTCTTTCAGCCTCTGCCTCGATGCGCTGGCCGCTTCCCACCAGGCAGTATTTGATGTCAGCACCTCGTCCaatcacagcgttgttacagaTGACGCTGCCCTGAATATTACACCtgcagaaaatataataaaaatataattcataaaacaaatatatcaatattacaGCAGAACAGAGACCAGGGCGGAAGAGTcaagaaatatacaaaaacaatacagaaacaaaacaatatactaaatattaatctaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186164 lncRNA upstream 32529 93285 ~ 94573 (+) False G137614
TU186132 lncRNA upstream 58240 55706 ~ 68862 (+) True G137596
TU186208 lncRNA downstream 44841 175080 ~ 176638 (+) True G137639
TU186191 lncRNA downstream 63070 193309 ~ 193870 (+) True G137627
TU186188 lncRNA downstream 63157 193396 ~ 193938 (+) False G137627
TU186190 lncRNA downstream 63157 193396 ~ 193870 (+) False G137627
TU186264 lncRNA downstream 213629 343868 ~ 357819 (+) True G137669
XM_007235353.3 mRNA upstream 40991 75683 ~ 86111 (+) True LOC103047317
XM_007235354.3 mRNA upstream 40991 75683 ~ 86111 (+) False LOC103047317
XM_022677731.1 mRNA upstream 86354 31377 ~ 40748 (+) True LOC103023540
XM_007235358.3 mRNA downstream 31618 161857 ~ 173049 (+) True klhl20
XM_022677734.1 mRNA downstream 47424 177663 ~ 192997 (+) True dars2
XM_022677736.1 mRNA downstream 308459 438698 ~ 694723 (+) True astn1
XM_022677737.1 mRNA downstream 308459 438698 ~ 694723 (+) False astn1
XM_022677739.1 mRNA downstream 308460 438699 ~ 694723 (+) False astn1
TU186165 other upstream 32529 93285 ~ 94573 (+) True G137614
XR_002651002.1 other downstream 632477 762716 ~ 781196 (+) False rfwd2
TU186393 other downstream 850741 980980 ~ 988638 (+) True G137756
TU186409 other downstream 907630 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 1367060 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 1496716 1626955 ~ 1638255 (+) True LOC111194189

Expression Profile