RNA id: TU186354


Basic Information

Item Value
RNA id TU186354
length 205
lncRNA type intronic
GC content 0.34
exon number 2
gene id G137729
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 654221 ~ 654449 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ctccttctctttctcaaGCTCTTTCTTaatctccctctatctctcactttctcttttactctctctctctcgctctctctttcacaatttatttactttgtttCCTCCATTAAATCTCCCAGTTAAACCCTGTAACTCAGCACCCCGagataaacacaaaacataatactttattaatatgctttattctaattttgttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186349 lncRNA upstream 127154 526248 ~ 527067 (+) True G137725
TU186264 lncRNA upstream 296402 343868 ~ 357819 (+) True G137669
TU186265 lncRNA upstream 299660 346725 ~ 354561 (+) True G137670
TU186188 lncRNA upstream 460283 193396 ~ 193938 (+) False G137627
TU186191 lncRNA upstream 460351 193309 ~ 193870 (+) True G137627
TU186362 lncRNA downstream 95392 749841 ~ 750410 (+) True G137737
TU186389 lncRNA downstream 252005 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA downstream 326484 980933 ~ 986154 (+) True LOC103021626
TU186427 lncRNA downstream 446939 1101388 ~ 1226517 (+) True G137782
TU186509 lncRNA downstream 696825 1351274 ~ 1455746 (+) True G137839
XM_022677734.1 mRNA upstream 461224 177663 ~ 192997 (+) True dars2
XM_007235358.3 mRNA upstream 481172 161857 ~ 173049 (+) True klhl20
XM_007235353.3 mRNA upstream 568110 75683 ~ 86111 (+) True LOC103047317
XM_007235354.3 mRNA upstream 568110 75683 ~ 86111 (+) False LOC103047317
XM_022677731.1 mRNA upstream 613473 31377 ~ 40748 (+) True LOC103023540
XM_022677743.1 mRNA downstream 108266 762715 ~ 781196 (+) False rfwd2
XM_022677742.1 mRNA downstream 108267 762716 ~ 781196 (+) True rfwd2
XM_022677747.1 mRNA downstream 160389 814838 ~ 969334 (+) False tnr
XM_022677744.1 mRNA downstream 160390 814839 ~ 969334 (+) True tnr
XM_022677746.1 mRNA downstream 160390 814839 ~ 969334 (+) False tnr
TU186165 other upstream 559648 93285 ~ 94573 (+) True G137614
XR_002651002.1 other downstream 108267 762716 ~ 781196 (+) False rfwd2
TU186393 other downstream 326531 980980 ~ 988638 (+) True G137756
TU186409 other downstream 383420 1037869 ~ 1039926 (+) False mrps14
TU186490 other downstream 842850 1497299 ~ 1499956 (+) False G137826
XR_002650979.1 other downstream 972506 1626955 ~ 1638255 (+) True LOC111194189

Expression Profile