RNA id: TU186491


Basic Information

Item Value
RNA id TU186491
length 1782
lncRNA type inter_gene
GC content 0.49
exon number 8
gene id G137826
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 1491816 ~ 1499956 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTACTTTACCatcatttttattgaaatttatATGTAGAACTTACCGGAACGAgggtgacataaaaaaaaaaaaaaacacgcaaaTATTAACATACATACTGTTTCCAGGATGGAGGAGGAAGTGTGATCTCAGCCCCCCACTCAGTAATAACAGAGCCAGAGGAAAATAACCCACTGTTAAAATAACCAGAGTCCACAGAAATACACTCTACTCTTCTCTTTAGAGGAGTGTCTttactcagacacacacacactcacacacactccattgCTCTTCACTTGGAACAAtcgagaaagaaagaaataaagaaaaaagatctGAATCCGAAAACATGAACCGGTTTCTAAAATGTGTGGGAATGATGAGGAATgtattaaaaactacttttttttttattcctaagagggaaagaaaaaacatgGTCTGGAGTAAATGAGTGTGGCTTTAAAATTACACTGAGCTTCataacaagtgtgtgtgtgtgtgtgtgtgtgtctttacaTTCTTTACGTAACGAAAAtatgagattaaaaaaaatatataataataaacaaccaTAATTCTGATAAAAAGGGTTTGGGAGGAGCAGACCTGTGTTGTTACTccagacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtatagtgtctGTAGATTttctgtatagtgtgtgtgtgtgtttatctaaGGAGAGTTTATGGGTCATCTCCATTGACGCTGTCGCCGTCGTCTTCTCCTTCCTCATGCtctccctcctcttcctcttctccttcCTCTTCTTCATTCTCTCCTCCGTGACTCTTCACctcttcctcctccagcaggtcaccctcctcttcctcctcctcttcagaGTCGTTGATCTCCTGCTCCTCCCGCTCTCGCTCCTTCTTAACGCTGGAGTGCTGCTGAGAAGAAGCTTCGCCTGCCTCAGTCTTCAACACCTTACCATCAGACTTCTTGCTGTGATCCTTCTCCATGCGATCTAAGCTTTCCAGAAGATAGTCCACCTTGTGCTTGATCTGAGCCAGTTCCCTCTTGATGGTCTGGAGGTCATCCACTTTAATGGCTCGCGATGAGGAGCGCTGGCTGCCTTTGGAGGACGAGGAAAAGCTGGACTTGGTCCGGCGGCTTCCTCCGCTCATGCTGACCCGAGCCCTTTTGGAGGGGATGACTGCCCGcgagagggggggagggggtggcGGGACGCGGGATGGGTAGGCATACATCCTGTCGTAGTAATCTCTTTGGAAATCATAGTCCAGCTCGAAGGTGGAACTGTACATATCTCCTGCTGGACGCTTCGTCGTCTGCGACCTGTGAGGTTTGGGTTCACCTGCCAGGTTGATGTCCAGCACCTGCCCCACGATCATCCGGCCGTCCTCCCCGGCCACCGCGGACCGGGCGTTCCTCTCGTTGGCGAACTGGACGAAGGCGTAGCCCTTGTGCACAGAGCAGCCCACGATCTTCCCGTACTTGCTGAAGATGGCCTCCACATCGGCCTTGGTCACCAGCATGGTGTTCAGGTTTCCGATGAAGACCCGCGAGTTCAGGGAGCGAGGGGTCCGTCTTGTTGGTCACGTTGCTCGCCATCAGGAGGCTGCTGGAGGGGGATCGGTCCATAGCGTCTGTGGCTTGCAGTCgttcgtctgtctgtctgtctgtctgcggTTTGTCACTGAGGGATGGGGCCAGTGTATGCAGGCTGGGGGAGTGGGGGGGTCTTGGGTGATTTCAGCCAAAACTACAATTCCCAGCAGCACGGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186509 lncRNA upstream 36070 1351274 ~ 1455746 (+) True G137839
TU186520 lncRNA upstream 51011 1440263 ~ 1440805 (+) True G137850
TU186427 lncRNA upstream 265299 1101388 ~ 1226517 (+) True G137782
TU186389 lncRNA upstream 479821 906454 ~ 1011995 (+) True G137754
XR_452701.2 lncRNA upstream 505662 980933 ~ 986154 (+) True LOC103021626
TU186528 lncRNA downstream 8309 1508265 ~ 1509483 (+) False G137856
TU186527 lncRNA downstream 8320 1508276 ~ 1509554 (+) True G137856
TU186529 lncRNA downstream 9697 1509653 ~ 1512939 (+) False G137857
TU186531 lncRNA downstream 9697 1509653 ~ 1512939 (+) True G137857
TU186532 lncRNA downstream 9697 1509653 ~ 1512939 (+) False G137857
XM_022677660.1 mRNA upstream 476 1489312 ~ 1491340 (+) True LOC111194186
XM_022677661.1 mRNA upstream 509 1489305 ~ 1491307 (+) False LOC111194186
XM_022677760.1 mRNA upstream 42789 1436940 ~ 1449027 (+) True rnf32
XM_022677759.1 mRNA upstream 156623 1300585 ~ 1335193 (+) True rbm33
XM_007229176.3 mRNA upstream 246047 1241235 ~ 1245769 (+) True LOC103046777
XM_022677766.1 mRNA downstream 64974 1564930 ~ 1594076 (+) True cdc73
XM_022677768.1 mRNA downstream 184437 1684393 ~ 1692239 (+) True LOC103022771
XM_022677770.1 mRNA downstream 223579 1723535 ~ 1735903 (+) True LOC103022156
XM_022677771.1 mRNA downstream 240215 1740171 ~ 1746238 (+) True LOC111194259
XM_022677773.1 mRNA downstream 277269 1777225 ~ 1802319 (+) True tsc22d2
TU186409 other upstream 451890 1037869 ~ 1039926 (+) False mrps14
TU186393 other upstream 503178 980980 ~ 988638 (+) True G137756
XR_002651002.1 other upstream 710620 762716 ~ 781196 (+) False rfwd2
TU186165 other upstream 1397243 93285 ~ 94573 (+) True G137614
XR_002650979.1 other downstream 126999 1626955 ~ 1638255 (+) True LOC111194189
TU186579 other downstream 335521 1835477 ~ 1838517 (+) False LOC103042893
TU186618 other downstream 522799 2022755 ~ 2024386 (+) True G137929
TU187669 other downstream 2301897 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 2333299 3833255 ~ 3834460 (+) True G138701

Expression Profile