RNA id: TU186621


Basic Information

Item Value
RNA id TU186621
length 210
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G137930
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 2025193 ~ 2028808 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ccaagtggttgctaggcagttgctaagtggttgctaggcagttgctaacgttttccaggtggttgctaagtggttgctaactggttgctaggcagttgctatcatttctaaagtggttgctaagtggttgctaggcagttgctaacgttttcctagtggttgctaagtggttgctaagtggttgctaggcagttgctaacgttttccagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186605 lncRNA upstream 36727 1987814 ~ 1988466 (+) True G137917
TU186585 lncRNA upstream 100338 1921553 ~ 1924855 (+) True G137902
TU186500 lncRNA upstream 106782 1916147 ~ 1918411 (+) False G137831
TU186501 lncRNA upstream 106782 1916147 ~ 1918411 (+) True G137831
TU186581 lncRNA upstream 145801 1879072 ~ 1879392 (+) True G137898
TU186635 lncRNA downstream 178559 2207367 ~ 2237690 (+) False G137943
TU186636 lncRNA downstream 204741 2233549 ~ 2237690 (+) True G137943
TU186644 lncRNA downstream 215708 2244516 ~ 2245661 (+) True G137951
TU186653 lncRNA downstream 260284 2289092 ~ 2292464 (+) True G137960
TU186665 lncRNA downstream 321826 2350634 ~ 2371378 (+) True G137965
XM_007229162.3 mRNA upstream 110174 1869474 ~ 1915019 (+) True LOC103042278
XM_007229163.3 mRNA upstream 164678 1855297 ~ 1860515 (+) True kdsr
XM_022677685.1 mRNA upstream 173880 1835502 ~ 1851313 (+) True LOC103042893
XM_022677778.1 mRNA upstream 207981 1810725 ~ 1817212 (+) True LOC103043726
XM_022677776.1 mRNA upstream 222874 1777227 ~ 1802319 (+) False tsc22d2
XM_022677781.1 mRNA downstream 73413 2102221 ~ 2230065 (+) False dpp6
XM_022677782.1 mRNA downstream 88528 2117336 ~ 2230065 (+) False dpp6
XM_022677780.1 mRNA downstream 97558 2126366 ~ 2230065 (+) True dpp6
XM_022677783.1 mRNA downstream 135067 2163875 ~ 2230065 (+) False dpp6
XM_022677788.1 mRNA downstream 293230 2322038 ~ 2362870 (+) True LOC103042593
TU186618 other upstream 807 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 186676 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 386938 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 525237 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 985267 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 1773045 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 1804447 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 1804447 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 2067208 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 2137234 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile