RNA id: TU186879


Basic Information

Item Value
RNA id TU186879
length 1209
lncRNA type sense_over
GC content 0.48
exon number 6
gene id LOC103026108
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3115420 ~ 3119488 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGGTTCCCGGATGCTGTGCGTTAAGCGGACGGACTGCGGTAAGAATGCGTTGGTTAGCGCTGTCGGTTCTTGCGGTGTGGCTTTGCGCGTTTTCCAGCGCTGCCGGAGAGAGCACGGGAGTTAAAAAGATGAAGATGCAGTTCGCCACCGGGCCACTTCTCAAATTCCAGATCTGTATCTCCTGAGGGTACAAGCGGGTGTTTGAGGAGTACACGCAGGCTCTGTACCAGCGGTACCCAGACATCCGCATTGAGGGAGAGAACTATCTTCCTCTGCCTGTTTACAGGTATATTGCTTCCTttctgtctattttcaaactgctgctgattggaGTGATTGTTGTGGGGAAGGACCCATTCGCTCTCTTCGGTATGCAAGCACCAGGACTTTGGGTTTGGAGTCAAGAAAATAAGATATATGCCTGTATGATGGTGTTCTTCTTCAGCAATATGATTGAAAACCAGTGCATGTCTACAGGTGCTTTTGAAATCACGCTCAATGATGTTCCGGTGTGGTCCAAGCTGGAGTCCGGTCACCTGCCTTCCATGCAGCAGCTGGTGCAGATCCTGGAGAATGAAATGAAGCTGAATGTGCACATGGACAGACTTCCACACCATCACTCCTAACCCTGCCTCCACCCCACCTCCTGGAGTCTTGGACCCTCCATGTTTGAGGTGGGGCTCTCCTTCTACGGTTGCGAGGCGACATTTATGAAGGTCTGTGCTGAAAGTAGAGGATCTACTAGCGCAGGCTGGATGTCCTGCTCGTTTCTCGCCATGCCCCTCTGGAGATGCCCCGCCCACAGATACTGGCTTGGGGTCCATGGCAACAGTGGTGGCTGTTCATTACTACTGAAGCCCATAAGCTGTGCAATAACCATTCAGTTCAGGATTAACATATGAATCAGGGGAGTCTGCACTAATGAGTGTGTTTAGGTTGTGGTGAGCTCCTTCCAGCATTGCTGCCACTGAGGGGATCCAGCAGAgtctcttcctttcttccttttaAATTCCATTACATGTCTAAAACATGGTCTTTGCATTGTTTATCAATAGATAGATGTTCTAACTTATTGCCCTAAATGACCCAATCATGGCTATTTAACGTGAGACAGAGTGCTGGTTATTTTATTGATCCTGCTGTacttttgtatttgtttctaTAGCCAACCATGTTAACtcaaaatgataataaaattaatattctaAC

Function

GO: NA

KEGG: NA

JBrowse2

Loading

Neighbor

RNA id RNA type direction distance location representative gene id
TU186876 lncRNA upstream 827 3110402 ~ 3114615 (+) True G138123
TU186866 lncRNA upstream 30577 3082118 ~ 3084865 (+) False LOC103024858
TU186867 lncRNA upstream 31998 3082118 ~ 3083444 (+) False LOC103024858
TU186838 lncRNA upstream 118365 2996554 ~ 2997077 (+) True G138092
TU186823 lncRNA upstream 179313 2918488 ~ 2936129 (+) False LOC103045052
TU187453 lncRNA downstream 37273 3156756 ~ 3175364 (+) True G138524
TU187454 lncRNA downstream 37273 3156756 ~ 3175364 (+) False G138524
TU187486 lncRNA downstream 137418 3256901 ~ 3296382 (+) True G138534
TU187564 lncRNA downstream 373213 3492696 ~ 3494363 (+) True G138598
TU187558 lncRNA downstream 385093 3504576 ~ 3506945 (+) True G138593
XM_007250726.2 mRNA upstream 6938 3105446 ~ 3108504 (+) True LOC103045957
XM_007250656.3 mRNA upstream 30579 3082056 ~ 3084863 (+) True LOC103024858
XM_007250654.3 mRNA upstream 45491 3063927 ~ 3069951 (+) True LOC103024237
XM_007250655.3 mRNA upstream 65666 3038419 ~ 3049776 (+) True LOC103024543
XM_007250650.3 mRNA upstream 89929 3017580 ~ 3025513 (+) True aldh9a1
XM_007250661.3 mRNA downstream 8262 3127745 ~ 3142947 (+) True LOC103026425
XM_022677692.1 mRNA downstream 27764 3147247 ~ 3149780 (+) True LOC107197652
XM_007250662.3 mRNA downstream 31393 3150876 ~ 3156054 (+) True txndc12
XM_007250727.2 mRNA downstream 68249 3187732 ~ 3193555 (+) True LOC103046575
XM_007250665.3 mRNA downstream 75065 3194548 ~ 3200085 (+) True cope
TU186618 other upstream 1091056 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1276925 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 1477187 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 1615486 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2075516 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 682370 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 713772 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 713772 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 976533 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 1046559 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile

TU186879 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 400.
End of interactive chart.

TU186879 Expression in each Bioproject

Bar chart with 7 bars.
TU186879 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5000.
End of interactive chart.

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031908 True 1301 mRNA 0.42 6 NC_007113.7 9684305 ~ 9696283 (-)
grasscarp (Ctenopharyngodon idella) TU26310 True 327 TUCP 0.43 2 CI01000003 1864608 ~ 1866921 (+)
rainbow trout (Oncorhynchus mykiss) TU158548 True 335 lncRNA 0.36 1 NC_048566.1 36905465 ~ 36905799 (+)
rainbow trout (Oncorhynchus mykiss) TU2430274 True 1175 lncRNA 0.49 6 NC_048592.1 29265047 ~ 29269424 (+)
eurasian perch (Perca fluviatilis) TU158548 True 1861 lncRNA 0.42 6 NC_053122.1 24863027 ~ 24870087 (+)
bowfin (Amia calva) TU71005 False 1092 lncRNA 0.47 6 CM030126.1 37281218 ~ 37285365 (-)
mexican tetra (Astyanax mexicanus) TU158548 True 764 lncRNA 0.48 9 NC_035909.1 41356722 ~ 41359883 (-)
mexican tetra (Astyanax mexicanus) TU71005 True 1255 lncRNA 0.35 2 NC_035902.1 16622749 ~ 16677399 (-)