RNA id: TU187453


Basic Information

Item Value
RNA id TU187453
length 2519
lncRNA type inter_gene
GC content 0.39
exon number 5
gene id G138524
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3156756 ~ 3175364 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTAAGAACTACATTTTATTGATAATCAAGAGTGAGTGACTAGATTTATACATCTGCTCAGAAATATAGGAGACAACCAATACAGTGTGGGATAAAAACAGTCTCACTCTGCTTAGCTTATTAACTAAGTACCTGTATTGAAGCAAAGTGagatatattattaatcatACAAAACAAATTGAAACAAATGCCAATAGATCTGTGtagacatacatacatacatacaaacatacttAATTTTTGAACACGAAAGGTCCCTTATGGATTGTGCAGTACATCCAGTACACGTTAAACAACtacaattgtttaaaaaaaaaaaaaagcgcagtCTAATCAAGTTTCTCTCTTATCCAGCAGGTGGCACACGAGGTCTGAGCCCATCAAAAGATaagcctctcacacacattattaaaaagctTTCCTCAATATGCTTAAAAAGGCTCACTAGTAGAAAAACTGGCCAGATTTGAGCTAAAAGCAGAAAGTCTTCTTCAAAACTAGATTAGCAATTAAAGATGGCACTATGATGTTTACTATAAACGTATAAAGTCGCTTCCCATGCTGAAAtttcataaaacattataaaacattgcAGATATTGAAGGCAGTTCTAGtcaagtgttttttaaaagacTGTGTACAAGAGGaactttattaaacaaataaattaaaagactgaaaatatatctatctgtctataaaagtttaattattgtatatcgtacaccaaaaaaaaaaagaggacgagaaaaacAACGCTCTACAGGAATGTCCGATAAATCACCCTTATCTAAAACTGAGCGCTATACATTTTTAGCTGTAGATATTGTATAAAACAGATTACATGCAGGCAGTCCAGGCAGGCTTTAATGCCACATGATCTAAGAAAGAGTCCagaggctaaaaaaaaaaaatcctacaatCCTTCATAGAAACcaatttcctaaaaaaaaaaataataataataataattatacatacCTGCTTGGAAGCCAGTACAGTAAAAAGCTATTACTATACCAGCAAGGTAgaaaaacgtttaaaaaaaaaaaaaaatcatgtgacTGCTGCTCTGGTTACTGATAgactttacttacttacttactaattTATTAGtgttactgtacatttattcagtgtttccCCACTTTTATgcctgaattatttattataattatcatagaaaacaaacaaacaaacaaaaaactatcgtacaaaatgtaagtataatatTGTCTGATTGGTAGATTGATAAAACATGACGTGAccataaaacagtaaatcagCCTTAAAGGCACGTTTCATGCTTAGTAAGAAATGAGAGAAATACAAGTCATTCTTACATAAATCTGTTcatatcttttcttttttttttgtaaaaagtgaaaaatagagCAAATTTAAAATTTTGAGGGCTTTTCTGGAATCACTCTGCTTCTCTGCTCTACAGAAAAGtagactttttttgtttttcacagcTAGAAAAATAACAAGGGGTCAGTTAGTGCTACCCAGGAACATAAATAAGTACACTTGGAGTGAGCTGTAGTGTGATAgtgtaataatgtataatatgtaataataatgtgtaataatatgTGCCGTTAGATCACAGTGGTAAGAATCAGCAACACTCCCTTCCTAGCTTAACGACTGCGTGCCGTTAAGATAACAGGTTCCCAAAGACACAAGTAGTCGAGATTGACTGGGAAATAGAGGAGTGTGGGTAGCGATGgactgggattaaaagcgtccCTGCTTCGCGTCTCCGATGGCTCCCCACACGTCAAACACAAACTCATCAGGGAAGGCGAAGTCCCCGAGTGCTTCATCCAGAGCCATGGCAAATTCATCCGGGTTCACTTTGTCCCGACCAACCTCCACCATCGTTGCCGATAATTCCGTGTCACGGATGCCCATGTAACTCTCCAGCAGGTCATCTACTTTCTTCACGGCCTTCTCCTCAAACTCTGTGGGCATGTCCTCCACGGTCGCTGGGCCTTTAGAGCGTAATCTCAGGGTTCCTTTGCCGGTCCCAATTTTGTTCTCTCCTCCAGGTTTGCCTCCTTTCGACCGTGGCTCGAGCATATCGAAGGCCTTCATGGGCTCCACCAGTTTAAGGGTAAAGGGCTTGTCTTTGGGCAGGTCCTTCAGCATGCGGGCCACTTCATAATGCCGCGTCCCCACAATGTTCTGCCCATTAATGCACTCGATATGATCTCCCACACAGATCACCTTCACGCCATCCACCACACTGCCTTCCTTTattcgctgcacacacacacacacacacacacacacacacacacacacacactctcagaggAACAGGTGGGGCTACGAGAAGCTCATTAGAAACCCAAacaacctgcagcagcagaagcagatcCTCCTCACAGCCCTTCCCCAGCCCGGAGCCCCCGAGAAAACAGGAGTAAAGTGTAGAATTTGTCAGATAAGCTCTGcagatcctcctcctcctcctgctcctaaACTCTGGGCACGAAAACAATACTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU186879 lncRNA upstream 37273 3115442 ~ 3119483 (+) False LOC103026108
TU186876 lncRNA upstream 42141 3110402 ~ 3114615 (+) True G138123
TU186866 lncRNA upstream 71891 3082118 ~ 3084865 (+) False LOC103024858
TU186867 lncRNA upstream 73312 3082118 ~ 3083444 (+) False LOC103024858
TU186838 lncRNA upstream 159679 2996554 ~ 2997077 (+) True G138092
TU187486 lncRNA downstream 81537 3256901 ~ 3296382 (+) True G138534
TU187564 lncRNA downstream 317332 3492696 ~ 3494363 (+) True G138598
TU187558 lncRNA downstream 329212 3504576 ~ 3506945 (+) True G138593
TU187578 lncRNA downstream 349267 3524631 ~ 3526308 (+) True G138609
TU187623 lncRNA downstream 408654 3584018 ~ 3584290 (+) True G138642
XM_007250662.3 mRNA upstream 702 3150876 ~ 3156054 (+) True txndc12
XM_022677692.1 mRNA upstream 6976 3147247 ~ 3149780 (+) True LOC107197652
XM_007250661.3 mRNA upstream 13809 3127745 ~ 3142947 (+) True LOC103026425
XM_007250660.3 mRNA upstream 37268 3115420 ~ 3119488 (+) True LOC103026108
XM_007250726.2 mRNA upstream 48252 3105446 ~ 3108504 (+) True LOC103045957
XM_007250727.2 mRNA downstream 12368 3187732 ~ 3193555 (+) True LOC103046575
XM_007250665.3 mRNA downstream 19184 3194548 ~ 3200085 (+) True cope
XM_022677831.1 mRNA downstream 35196 3210560 ~ 3289693 (+) True st6galnac3
XM_022677832.1 mRNA downstream 135797 3311161 ~ 3361634 (+) True st6galnac5
XM_022677833.1 mRNA downstream 242062 3417426 ~ 3477561 (+) True ak5
TU186618 other upstream 1132370 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1318239 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 1518501 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 1656800 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2116830 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 626489 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 657891 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 657891 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 920652 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 990678 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile