RNA id: TU187666


Basic Information

Item Value
RNA id TU187666
length 342
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G138671
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3720938 ~ 3753410 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGGTAAATATAGATATACTTTAATATTCTGAAGTTCTTGCCCAGTTGTAAATACAACTTTCAGACTGGAAGGCACAGTAAGACCAGACTACTGAGTAGCCTCTTAAACATAACTCAAACAGAAGACCAGTCAGAAGACAAATAAACAGGAGCTGCGTGTCGCCTAGAATaacaaacccaaaaaaaacaaaataaataaatctagaaAACGCTGAGAATGATGAAGAAAAGAAAtcttaacaaaaaaacacaacaggagcacaaatgacaaaatgaacataacattcaACCCAGGCGTCGGAAAAACACTACTgcccacaaaaaaaaaaaaaaaaaacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187658 lncRNA upstream 39008 3681726 ~ 3681930 (+) True G138665
TU187656 lncRNA upstream 51362 3669362 ~ 3669576 (+) True G138663
TU187654 lncRNA upstream 56930 3663776 ~ 3664008 (+) True G138661
TU187651 lncRNA upstream 109536 3611193 ~ 3611402 (+) True G138658
TU187628 lncRNA upstream 118745 3601855 ~ 3602193 (+) True G138647
TU187754 lncRNA downstream 128141 3881551 ~ 3907123 (+) True G138731
TU187772 lncRNA downstream 282961 4036371 ~ 4039858 (+) True G138744
TU187781 lncRNA downstream 315377 4068787 ~ 4072088 (+) True G138747
XR_002651006.1 lncRNA downstream 342587 4095997 ~ 4102241 (+) True LOC111194271
TU187795 lncRNA downstream 351570 4104980 ~ 4114118 (+) True G138758
XM_007250674.3 mRNA upstream 122336 3585149 ~ 3598602 (+) True LOC103030773
XM_007250671.2 mRNA upstream 139812 3571143 ~ 3581126 (+) True LOC103030036
XM_022677693.1 mRNA downstream 51377 3804787 ~ 3839372 (+) True LOC103047488
XM_022677694.1 mRNA downstream 147744 3901154 ~ 3942480 (+) True LOC103031935
XM_022677843.1 mRNA downstream 242532 3995942 ~ 4002916 (+) True LOC103021527
XM_007250680.3 mRNA downstream 269026 4022436 ~ 4046639 (+) True LOC103032574
XM_022677844.1 mRNA downstream 299320 4052730 ~ 4065474 (+) True LOC103033521
TU186618 other upstream 1696552 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1882421 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 2082683 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 2220982 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2681012 1037869 ~ 1039926 (+) False mrps14
TU187669 other downstream 48443 3801853 ~ 3815437 (+) False LOC103047488
TU187722 other downstream 79845 3833255 ~ 3834460 (+) True G138701
TU187723 other downstream 79845 3833255 ~ 3834460 (+) False G138701
TU187791 other downstream 342606 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 412632 4166042 ~ 4171980 (+) False LOC103023077

Expression Profile