RNA id: XM_022677693.1


Basic Information

Item Value
RNA id XM_022677693.1
length 2472
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC103047488
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 3801853 ~ 3839372 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aaggtttcttcctccttccTGTGCTTCCATTTACTTCACACCTTACGTCCGTACAGTCGCACCCTGTGTAGCCTACTGGAGTTTCCCCCGTAACCTGGAGCCCGGCTTTAGCAGGGTGGAGCGGGAGTCAAGCTTATATTCTATGGTGAGAGAGGCTCGGCGGAGTGTGGCATGGAGAACAACGTCACGCAAATCTCTCGAGAGGACCTACAGGACCTGCGTGAGGCCTTCAACAAAATCGACATTGATAACAGCGGCTTCGTCAGCGACTTCGAGCTGCAGGAGCTCTTTCGGGAAGCCAGCTTCTCTCTGCCAGGGTACAAGGTGCGGGAGATAGCGGAGAAGTTCGTCGCCGGGGACACCAACAAAGACGAGAAGATCAGCTTCGAGGAGTTTGTTGCGATATACCAGGAGCTGAGGAGCAAAGAAGTGAGGGAGACCTTCCGCAAGACCATTTCCAGACGAGATGGAATCCACTCGTTCGGAGGAACATCTGGAATCTCGAGCGAGGGAACGCAGCACTCGTACGCCGATGAAGAGAAAGTGGCCTTTGTAAACTGGATCAATAAGGCCTTGGCAAACGACCCCGACTGCAAACATCTCATCCCTATGGACCCCACCACCGACAGCCTGTTCAAATCCGTCAAGGATGGAATACTTCTATGCAAAATGATCAACCTCTCCCAGCCAGACACGATCGATGAACGAGTCATCAATACAAAGAAGCGCACAACGTTCACCATGACTGAGAACCTGATCCTGGCCCTGAATTCAGCCTCAGCCATTGGTTGTACAGTGGTGAACATCGACTCCCAGGACATGATAGCTGGGACCCCCCACTTGGTGCTGGGGCTCCTCTGGCAGATCATTAAGATCGGCCTCTTTGCAGACATCGAGATTTCTCGCAATGAAGGTCAGAAACTCACCACAATCCAGCACATTTCTCAATCCTGTCCTTGGGGTTCCATCGCCCTGAACAATCTGTACCAGCATGATCttcaatgtttgtttttttcacaggACTCCAGGGCCTACTTCCACCTGCTGGATCAGATCTCCCCGAAAGGAGACGGAGACGACGAGATGCGGATCTCTATCGACATGTCCGGCCTGAACGAGCGTGATGACGAGAGGAGGGCGGAGCTAATGCTGAGACAGGCAGCTCGTCTGGACTGCAGGCAGTTCGTCACCCCTCAGGACGTGGTGGCGGGAAACCACAAGCTCAACATGGCTTTTGTAGCCAACTTGTTCAACATGTTTCCCGCTCTGAGCAGACCAGCCAACAACGGCATCGACCTCGCCATGCTGGAGGGGGAATCGCGAGAAGACCGGACCTTCAGGAACTGGATGAATTCGCTGGGGGTTAATCCATACGTCAATCACCTGTACAGtgaccTGATGGACGGTCTGATCATTCTTCAGCTGTACGAGCGAATCCAGGTTCCTGTGGACTGGAGGAAAGTCAACCGTCCTCCATATTCCATTCTGGGCTCCAACATGAAAAAACTTGAGAACTGTAATTATGCTGTAGAGCTGGGCAAAAGGGAAGCAAAGTTTTCTCTGGTGGGGATCGGAGGTGAAAATATCAACGAGGGCAGCGCCATGCACACCCTGGCACTGGTTTGGCAGCTAATGAGAAGGTACACAGTCAAAGTTCTGGCGGACATCGGCCACGGAGAGAAAGTAAACGACCAGATCATCGTCGACTGGGTGAACAGCACTTTACAGAAAGGACAAAAAGACTCGTCTATCAAAAACTTTAAGGACAAATCGATCAGCACCAGCCTGCCGGTGATCGATCTGATCGATACCATAGCCCCCGGCGCCATCAAGAGCGAGATGGTGAAGAGAGGAGACATGAGCCCTGAGGATAAACTCAACAACGCAAAgtATGCCATCTCTGTGTCTCGTAAAATCGGAGCCAAGGTGTACGCCCTGCCCGACGACCTCGTAGAGGTTAACCCAAAGATGGTGATGACTGTATTCGCATGTTTGATGGGGAGGAGTCTGAACAAAGTGCAGGGCTAACCTTTGTGTCCTTTTTTCATCTGTTTCCTCTCATTACCTTTCTGTCATTCGTCCGTGCCCCATCTATTTCCATAACTGCCATTCGCTCCTTCTTTCTGAGTCCTGGTTTATGGAATTTCTCACCCAGAAATGCTAAGAATAAAATATTACGAAATGCTAACAGACCCTCTCTTATTCATTATTAGCACCATTAGCATTTTTGGGTGAGGTTTTTTTCATGGACCTTAAAATCTACCATTTCTAAATGCCCCACCATTTCTGTAATATCTTTATATCTtacctttttatctttttatgaaACATAGTGATTGCTGAAACATGAAAATGTCcactaaacatttaatttttgctGGCAACATAATATGCATCCAGGTGTTGAACACGTGTTCATGTTTGTAAATGTTTGCTTTCCAATgagtcaaaaaaataaatctgtcaaATAAA

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187666 lncRNA upstream 51377 3720938 ~ 3753410 (+) True G138671
TU187668 lncRNA upstream 71327 3732030 ~ 3733460 (+) True G138672
TU187658 lncRNA upstream 122857 3681726 ~ 3681930 (+) True G138665
TU187656 lncRNA upstream 135211 3669362 ~ 3669576 (+) True G138663
TU187654 lncRNA upstream 140779 3663776 ~ 3664008 (+) True G138661
TU187754 lncRNA downstream 42179 3881551 ~ 3907123 (+) True G138731
TU187772 lncRNA downstream 196999 4036371 ~ 4039858 (+) True G138744
TU187781 lncRNA downstream 229415 4068787 ~ 4072088 (+) True G138747
XR_002651006.1 lncRNA downstream 256625 4095997 ~ 4102241 (+) True LOC111194271
TU187795 lncRNA downstream 265608 4104980 ~ 4114118 (+) True G138758
XM_007250674.3 mRNA upstream 206185 3585149 ~ 3598602 (+) True LOC103030773
XM_007250671.2 mRNA upstream 223661 3571143 ~ 3581126 (+) True LOC103030036
XM_015606179.2 mRNA upstream 223661 3571143 ~ 3581126 (+) False LOC103030036
XM_007250673.2 mRNA upstream 223661 3571143 ~ 3581126 (+) False LOC103030036
XM_007250672.2 mRNA upstream 224850 3571143 ~ 3579937 (+) False LOC103030036
XM_022677694.1 mRNA downstream 61782 3901154 ~ 3942480 (+) True LOC103031935
XM_022677843.1 mRNA downstream 156570 3995942 ~ 4002916 (+) True LOC103021527
XM_007250680.3 mRNA downstream 183064 4022436 ~ 4046639 (+) True LOC103032574
XM_022677844.1 mRNA downstream 213358 4052730 ~ 4065474 (+) True LOC103033521
XM_022677845.1 mRNA downstream 221230 4060602 ~ 4065474 (+) False LOC103033521
TU186618 other upstream 1780401 2022755 ~ 2024386 (+) True G137929
TU186579 other upstream 1966270 1835477 ~ 1838517 (+) False LOC103042893
XR_002650979.1 other upstream 2166532 1626955 ~ 1638255 (+) True LOC111194189
TU186490 other upstream 2304831 1497299 ~ 1499956 (+) False G137826
TU186409 other upstream 2764861 1037869 ~ 1039926 (+) False mrps14
TU187791 other downstream 256644 4096016 ~ 4102214 (+) False LOC111194271
TU187783 other downstream 326670 4166042 ~ 4171980 (+) False LOC103023077
TU187927 other downstream 404626 4243998 ~ 4245864 (+) False G138839
XR_002651008.1 other downstream 863974 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 863980 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile