RNA id: XM_022677666.1


Basic Information

Item Value
RNA id XM_022677666.1
length 755
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC103023077
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4165943 ~ 4172010 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGGAGATGGAGCAGGGGTTGGTTGGGGGTGGGCGTTGCTTGCTCTACAGAGCTCTATAAGTATTAAGGAGTGAGCTGAAGTGCTCTGAAAGTGTGCTCTGTGCTTCACtcccatctctctcactctgcttACCTTTACCTCACTCCTCATTCCTCACTCCTCACTCTCGGGCAGCATGGCGGGGAGGTACGGGCTCAGTCTGGGGTTCTGTTTGGTTCTGTTGGTTCTTCATTCCGCCGCAGAAACGCACAAAAAACACGAAAACGACGCGGCTCACCATCACTCTGCCCCCTCCGGAGCTACAGCAGGAGCACGGAATCAGGACAAACCGAAGCGCCTCTTCGCCAGGACGCGCTACCTGCCCACAAAGCAGCTCCACGTGCAGAGACCCAAGCCTGAGACTGTGGGTGCGGCACCCGTGCCGGTGCGCCGCTGTGCCGGCCTGATGGAGAGCTGCTCTGGACACGTTCCATGCTGTGATTCCTGCGCCTCCTGCCACTGTAGACTGTTTAACACCATCTGCCACTGCTGGAGGCTGGGAAACTGCACCAAAAAGACTTAACACCTTTCTGAAGCTACAGATTCTGAAGACGGGGGTGGAAACCTCAGAACAATTAActcttattacatttattacaactATTACAATTACAGCTATTATTGATTCAAATGACTTTgctacaattatttaaaaaaaaaagaatattattataattattaaagaaAGATATTCActacattgccaaaagtatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187795 lncRNA upstream 51825 4104980 ~ 4114118 (+) True G138758
XR_002651006.1 lncRNA upstream 63702 4095997 ~ 4102241 (+) True LOC111194271
TU187781 lncRNA upstream 93855 4068787 ~ 4072088 (+) True G138747
TU187772 lncRNA upstream 126085 4036371 ~ 4039858 (+) True G138744
TU187754 lncRNA upstream 258820 3881551 ~ 3907123 (+) True G138731
TU187782 lncRNA downstream 761 4172771 ~ 4175585 (+) True G138748
TU187942 lncRNA downstream 64659 4236669 ~ 4237527 (+) True G138840
TU187938 lncRNA downstream 65599 4237609 ~ 4245864 (+) False G138839
TU187937 lncRNA downstream 71374 4243384 ~ 4245864 (+) True G138839
TU187940 lncRNA downstream 71374 4243384 ~ 4245864 (+) False G138839
XM_022677854.1 mRNA upstream 11424 4142096 ~ 4154519 (+) False LOC103022774
XM_022677855.1 mRNA upstream 11424 4142364 ~ 4154519 (+) False LOC103022774
XM_022677853.1 mRNA upstream 11424 4144233 ~ 4154519 (+) True LOC103022774
XM_022677846.1 mRNA upstream 70501 4081012 ~ 4095442 (+) True ccdc39
XM_007250681.3 mRNA upstream 85839 4075488 ~ 4080104 (+) True dcun1d1
XM_007250689.3 mRNA downstream 135638 4307648 ~ 4326399 (+) True LOC103035115
XM_007250691.2 mRNA downstream 167073 4339083 ~ 4344329 (+) True extl2
XM_007250692.3 mRNA downstream 213608 4385618 ~ 4393644 (+) True LOC103035953
XM_022677867.1 mRNA downstream 472991 4645001 ~ 4658142 (+) True LOC103026534
XM_022677869.1 mRNA downstream 501370 4673380 ~ 4681158 (+) False LOC103026815
TU187791 other upstream 63729 4096016 ~ 4102214 (+) False LOC111194271
TU187722 other upstream 331483 3833255 ~ 3834460 (+) True G138701
TU187723 other upstream 331483 3833255 ~ 3834460 (+) False G138701
TU187669 other upstream 350506 3801853 ~ 3815437 (+) False LOC103047488
TU186618 other upstream 2141557 2022755 ~ 2024386 (+) True G137929
TU187927 other downstream 71988 4243998 ~ 4245864 (+) False G138839
XR_002651008.1 other downstream 531336 4703346 ~ 4707243 (+) False LOC103039271
TU188084 other downstream 531342 4703352 ~ 4708095 (+) False LOC103039271
TU188085 other downstream 531342 4703352 ~ 4708095 (+) False LOC103039271
TU188086 other downstream 531342 4703352 ~ 4708095 (+) False LOC103039271

Expression Profile