RNA id: XR_002651007.1


Basic Information

Item Value
RNA id XR_002651007.1
length 1368
RNA type misc_RNA
GC content 0.50
exon number 8
gene id LOC103034146
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 4330871 ~ 4338197 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ggggggggcaGAATCCCTGCGTTCCAGTAAATCTAGCCCCCTTAATGATCATGCCTACTTTATTTAGGGAGTAGGATTCGATTTGGGACAAAACCACACTGGCTCGATTTGGGACACAGCAGGCAGAATGGCTGGACGTGCCCTGGCATTTATGCGGCTGGGAGCGAAAAGCAAAGCTCGTTTACAGTTTAATATTTGATTATGTAGATTATGTAGCTACACGCTCAGTTTAGCAGCTGtataatgttaatataaacCACGGGGAACTGCTgataaacactgtttacaatcAGTACAGCTACAGCTGTTAGCATGCAGCCGTGTCCCGCTGTACCGCTGTCCAACGGGCTCAGAGTCCCAGTTCTGGGATTGGGGACATCCCATGATGGAGGCTACTCCCATGAGGCTGTGGTTTACGCTCTACAAGAATGTGGCATCAGACACATAGACACAGCCAAGAGGTATGGCTGTGAGGAGGCCTTGGCACGTTCTATATCAGAGAGCAAAGTGCCACACGAGGACCTGTGGATTACAACCAAGCTATGGCCAGGGGACTACGGGTACCAGAGCACCAAGCAGGCTTGTAGGGCGTCTGCAGCCAGGCTTGGAGTGGAGTATGTAGACCTGTATCTAATACACTGGCCTGACTGCACAGTCCCAGGCCGGTCCAACAGGGAGGTTCGTGCAGACACATGGAGAGCACTGGAGGAGATGTACGATGAAGGATTGTGTCGTTCCATTGGTGTGAGTAACTTCCTCATCTCACATCTCGAGGAGCTGAAAGAAGACTGTGGAGTGGTTCCTCATGTTAACCAGGTGGAGTTCCACCCGTTTCAGCAACCGTGGGAGCTGGTGGAGTATTGTCGCAGAGAGGGAATTGCATTTGAGGGCTACTGCCCTCTAGCCAAGGGCCAGGCCCTGAACCATCCCCTCATCCTGGAGCTCGCAAAGAAGTACAACCGCAGTGCCTCCCAGATATGCATCCGCTGGAGCATTCAGAATGGGGTCATCACAATCCCAAAGTCCACCAAGCCACATAGGATTCTCGAAAACTGCAAAATCCCCATGCTAACTCTGTGAAATTAGGGCAGGAATGTGAGACTGGAGACATCCAACGATTGCTTAATTATGAGAATACACTGATTTAGCAAAACAGGAAATGGGAAAAGATACCAGAACCAGTCTACGGTCTGCAACCATtggccctgcagtggaaaagagaATTATATGGCTCCTACGTTAAATGTGTTACAAAGTTCATGTTGGGAGCTCGTTGGTGTTTGAATTCCAACTGGAAGACAAAGACATGGCAGCTCTGAGAGCACTGCATGATGGGAGGCATGTGAGCTGGGACCCAACCCACGTGGC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU187924 lncRNA downstream 98951 4179824 ~ 4234182 (-) True G138837
TU187888 lncRNA downstream 157537 4172979 ~ 4175596 (-) True G138822
TU187902 lncRNA downstream 170653 4162212 ~ 4162480 (-) True G138834
TU187898 lncRNA downstream 181998 4141468 ~ 4151135 (-) True G138830
TU187866 lncRNA downstream 255667 4075500 ~ 4077466 (-) True G138817
TU188049 lncRNA upstream 57893 4396090 ~ 4396932 (-) True G138913
TU188058 lncRNA upstream 82667 4420864 ~ 4421595 (-) True G138919
TU188186 lncRNA upstream 368016 4706213 ~ 4707525 (-) True G139011
XR_002651009.1 lncRNA upstream 414376 4752573 ~ 4754327 (-) True LOC111194275
TU188203 lncRNA upstream 483006 4821203 ~ 4838073 (-) True G139027
XM_022677859.1 mRNA downstream 29047 4290412 ~ 4304086 (-) False LOC103025293
XM_022677858.1 mRNA downstream 29047 4290412 ~ 4304086 (-) True LOC103025293
XM_007250743.3 mRNA downstream 43585 4281527 ~ 4289548 (-) True LOC103024967
XM_022677698.1 mRNA downstream 63231 4236669 ~ 4269902 (-) True LOC103024655
XM_022677862.1 mRNA upstream 11593 4349790 ~ 4360297 (-) False LOC111194273
XM_022677861.1 mRNA upstream 11593 4349790 ~ 4360297 (-) True LOC111194273
XM_022677863.1 mRNA upstream 23876 4362073 ~ 4381423 (-) False LOC103036275
XM_022677864.1 mRNA upstream 23876 4362073 ~ 4379053 (-) True LOC103036275
XM_007250693.3 mRNA upstream 59311 4397508 ~ 4432770 (-) True xpr1
TU187750 other downstream 481451 3848000 ~ 3851682 (-) False LOC103047802
TU187730 other downstream 499463 3832721 ~ 3833670 (-) True G138708
XR_002651005.1 other downstream 1270374 3050400 ~ 3062759 (-) True LOC103045355
TU187245 other downstream 1846382 2478781 ~ 2486751 (-) False LOC103042176
TU186973 other downstream 3231640 1050532 ~ 1101493 (-) True G138199
TU188266 other upstream 937909 5276106 ~ 5276468 (-) True G139074
TU188315 other upstream 991881 5330078 ~ 5330805 (-) True G139105
TU188844 other upstream 1670856 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 1684412 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 1781922 6120119 ~ 6124125 (-) True LOC103026010

Expression Profile