RNA id: TU188368


Basic Information

Item Value
RNA id TU188368
length 277
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G139155
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 5455746 ~ 5456022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGAGTgccttataaataaaaatcaaccagTGTGTTTCCCTTCGTACCGTTAAAGATGGCCAACCAACTTTTGCATACAGCTCACAGTGATGAGTTCTGTATGGATCTCCAGTGATGAACCTCAGTGCAGAGTGATACACTGGGTCCAATAATTTGAGGGAGCTGGAGGGAGCAAGTTTATAAATAATGTCGCCATAGTCCAGCACTGACAGTAAAGTTGCCTCAACTATTCTTTTTCTGGCGTGCATGGGGAAACAGGACTTGTGTCTATAAAAAT

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188363 lncRNA downstream 12840 5442556 ~ 5442906 (-) True G139150
TU188362 lncRNA downstream 13319 5441786 ~ 5442427 (-) True G139149
TU188320 lncRNA downstream 109712 5344829 ~ 5346034 (-) True G139110
TU188318 lncRNA downstream 112932 5342481 ~ 5342814 (-) True G139108
TU188308 lncRNA downstream 136930 5318574 ~ 5318816 (-) True G139098
TU188778 lncRNA upstream 80927 5536949 ~ 5614729 (-) True G139440
TU188769 lncRNA upstream 89222 5545244 ~ 5552062 (-) True G139435
TU188782 lncRNA upstream 117115 5573137 ~ 5744889 (-) True G139443
TU188790 lncRNA upstream 158767 5614789 ~ 5616029 (-) True G139451
TU188797 lncRNA upstream 215326 5671348 ~ 5671588 (-) True G139457
XM_022677884.1 mRNA downstream 410737 5031419 ~ 5045009 (-) False LOC103027706
XM_022677883.1 mRNA downstream 410737 5031419 ~ 5045009 (-) True LOC103027706
XM_022677874.1 mRNA downstream 650079 4771793 ~ 4805667 (-) True LOC103027391
XM_007250705.3 mRNA downstream 688453 4761753 ~ 4767293 (-) True LOC103039917
XM_007250702.3 mRNA downstream 706999 4738988 ~ 4748747 (-) False LOC103039099
XM_022677888.1 mRNA upstream 111162 5567184 ~ 5598775 (-) False ccdc24
XM_022677889.1 mRNA upstream 111162 5567184 ~ 5596954 (-) True ccdc24
XM_007229297.3 mRNA upstream 168837 5624859 ~ 5898800 (-) True b4galt2
XM_022677908.1 mRNA upstream 521245 5977267 ~ 5997977 (-) True LOC103034342
XM_022677909.1 mRNA upstream 521245 5977267 ~ 5981249 (-) False LOC103034342
TU188315 other downstream 124941 5330078 ~ 5330805 (-) True G139105
TU188266 other downstream 179278 5276106 ~ 5276468 (-) True G139074
XR_002651007.1 other downstream 1117549 4333133 ~ 4338197 (-) False LOC103034146
TU188021 other downstream 1117652 4335991 ~ 4338094 (-) False LOC103034146
TU188022 other downstream 1119857 4331650 ~ 4335889 (-) False LOC103034146
TU188844 other upstream 553031 6009053 ~ 6010867 (-) True G139489
XR_002651012.1 other upstream 566587 6022609 ~ 6054339 (-) False LOC111194281
XR_002651013.1 other upstream 664097 6120119 ~ 6124125 (-) True LOC103026010
TU188831 other upstream 848947 6304969 ~ 6374709 (-) True G139487
TU188973 other upstream 961363 6417385 ~ 6430319 (-) True G139587

Expression Profile