RNA id: TU188697


Basic Information

Item Value
RNA id TU188697
length 1203
lncRNA type inter_gene
GC content 0.54
exon number 3
gene id G139375
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6931518 ~ 6933473 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTCAAGGCGCTCTTTTTCCAGCCTCTCCTGCTCAAGGCGCTCTTTCTCCAGCTTCTCCTTCTCCAGGCGCTCTTTCTCCAGCCTCTCCTTCTCCAGGCGCTCTTTCTCCAGCTTCTCCTTCTCCAGGCGCTCTTTCTCCAGCCTCTCCTGCTCAAGGCGCTCTTTTTCCAGCCTCTCCTTCTCCAGCCTCTCCTGCTCAAGGCGCTCTTTCTCCAGCCTCTCCTGCTCAAGGCGCTCCTTCTCCAGGCGCTCCTTCTCCAGCCTGTCCTTTTCAAGGCGCTCCTTCTCCAGCCTCTCTTTCTCAAGGCGCTCCTTCTCCAGCCTCTCTTTCTCAAGGCGCTCCCTCTCCAGCCTCTCTTTCTCAAGGCGCTCCTTCTCCAGCCTCTCTTTCTCAAGGCGCTCCCTCTCCAGCCTCTCTTTCTCAAGGCGTTCCTTTTCTAACCTCTCCTTCTCAAAGCGCTCCTTTTCCAACTTTTCCTTCTCAAGACGCTCCCTCTCCAGCCTCTCCTTCTCCAGGCGCTCCTTTTCTAACCTCTCCTTCTCAAGGCGTTCCTTTTCTAACCTCTCCTTCTCAAGGCGTTCCTTTTCTAACCTCTCCTTCTCAAGGCGTTCCTTTTCTAACCTCTCCTTCTCAAGGCGTTCCTTTTCTAACCTCTCCTTCTCAAGGCGTTCCTTTTCTAATCTCTCCTTCTCAAGGCGTTCCCTCTCCAAACGCTCCTTCTCCAGCCTCTCCCTCTCCAGGTGTTCTTTTTCTAGCCTTTCCTTCTCAAGGCGCTCCCTCTCCAGCTTCTCCCTCTCAAGGCGCTCTTTCTCCAGCCTTTCCCTCTCAAGGCGCTCTTTCTCCAGTCTCTCCTTCTCTAGCCTCTCCTTCTCAAGGCGTTCCCTCTCCATGCGCTCCTTCTCCAGCCTCTCTTTTTCCTGTCTTTCCCTCTCCAAGCGCTCCTTCTCCAGCCTCTCCTTCTCTAACCTCTCCCTCTTCAAGCGCTCCTTTTCTAGCCTCTCCTTCTCTAGCCTCTCCCTCTCAAGACGCTCCTTTTCTAGCCTCTCCTTCTCCAGGCGCTCCTTTTCTAACCTCTCTTCTCAAGGCGTTCCTTTTTCTAATCTCTCCTTCTCAAAGCGCTCCTTTTCTAGCCTCTCCTTCTCCAGCCTCTCCTTCTCTAACCTCTCCCTCTTCAAGCGCTCCTTTTCTAGCCTCTCCTTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188689 lncRNA upstream 21857 6853944 ~ 6909661 (+) False G139371
TU188688 lncRNA upstream 74548 6853944 ~ 6856970 (+) True G139371
TU188679 lncRNA upstream 108832 6821915 ~ 6822686 (+) True G139362
TU188658 lncRNA upstream 163274 6768023 ~ 6768244 (+) True G139347
TU188655 lncRNA upstream 189449 6740834 ~ 6742069 (+) False dhx9
TU188727 lncRNA downstream 95809 7029282 ~ 7032672 (+) True LOC111194296
XR_002651017.1 lncRNA downstream 98337 7031810 ~ 7039380 (+) False LOC111194296
TU188725 lncRNA downstream 112945 7046418 ~ 7049729 (+) True G139395
TU188732 lncRNA downstream 153504 7086977 ~ 7087682 (+) True G139401
TU189130 lncRNA downstream 258435 7191908 ~ 7192404 (+) True G139710
XM_007258040.3 mRNA upstream 39619 6864807 ~ 6891899 (+) True LOC103041213
XM_007258038.3 mRNA upstream 79255 6842902 ~ 6852263 (+) True LOC103040698
XM_007258039.3 mRNA upstream 79255 6842902 ~ 6852263 (+) False LOC103040698
XM_007258033.3 mRNA upstream 167647 6757423 ~ 6763871 (+) True LOC103039234
XM_007258047.3 mRNA downstream 12205 6945678 ~ 6950144 (+) True c16h14orf119
XM_015608064.2 mRNA downstream 25063 6958536 ~ 6969199 (+) True LOC103043149
XM_022677926.1 mRNA downstream 42498 6975971 ~ 6989371 (+) True LOC111194294
XM_022677925.1 mRNA downstream 62080 6995553 ~ 7004249 (+) True LOC103024705
XM_007258049.3 mRNA downstream 71991 7005464 ~ 7018530 (+) True LOC103043453
TU188586 other upstream 664131 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 688947 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 771352 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 787617 6143375 ~ 6143901 (+) True LOC111194289
LOC111194229 other upstream 789920 6141005 ~ 6141598 (+) True LOC111194229
TU188724 other downstream 108201 7041674 ~ 7046288 (+) False LOC103044361
TU189488 other downstream 2227860 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2289136 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2606302 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2810225 9743698 ~ 9745355 (+) True G140103

Expression Profile