RNA id: TU188725


Basic Information

Item Value
RNA id TU188725
length 2051
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G139395
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7046418 ~ 7049729 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

agCCATAAAACCAACTCAATCCACACAATAACCCATCTGAAGATGAGTGAGGCTTAGGTCAGACAGCAGGAACTCACAGTCACAAACAAACTCAACGTGGAATCTGCACTGGAAAAAGAAGCTGAATTCATATGTATGTGCACATCGGGTCTGTGTGAACAGAACAGGTACATCAGCACAATTCATTtaggtaaacacacacattaattagTACAGTAATTGTGTTGGTGTATCAGTTTGTTCAGGTGGGATCGTGTAAATTCAGCATTTCTGTATGttgggtgtgttttgtttcaGGGCAGAGTCGCAGGGGTGGGGGGGCAGAAGAGAAAGGCATGTTGGGATAAGGCATTCAGAAAGGACTGAGCTTCATTATCTTTCAGTACTACTGTAAGAGCATACTGCCCCACTAGGAgcacttttccactGTTGTATACTGATCATCAGACTCAATAAGAGTCTTATCTGTACCTGTTTTCAGATGGGTGAGAAATCAAAGGGAAAGAAGCTTCATTATGCATTTCAGTAAGGTAATCAGACAACTACTACAGAGTAAACAGCCTCTGGAAATGTACTGGTGGAATGGAACTTCAATGCTTGGTGGAAAGCAGACACACTGTATGAAGTTTTTGTAAGTTAGTGTGTGGTACTAATGAAAAAATCAAAAtggttattaataaaatacatgaacaaCACTTTTACTGTTTGAAAATTATACTTACTGGACAAACCGGGTATCCAGTTATTCAAAACACATTGATTTTGGTCCTttaggctgcactgtaaactcaatgaagagAGTTTTGAACAAGCTCTTGTCGTCCATGCTCCATGTGTagactgacatgccaaaagacATGGGACAGCGCTATGTAAACTAAATCATAAAATGTTTCCCTAGAGGGGGACAGCTttggaacacccacacctgtgtaCTTTATGATGGGTTTCTTCTGAGTGAGGCTGAATACTAAccagcatgctcatgacaaggcgatgtgaattatggaagttgAAGTGAGGCCTGATAACGGGTACCAGATGAATGAAAGTAATACATATACCATATAAGACATTACAACCCATATTGGACAGTGCAGTAAGTGGTAAATAGTGCCGGGGGATTTTCACCCTTCACAGCTTTAATGCGATTTTCATGAAGTATGAAGTATGAATGACGTAATCActattttacagacattttatctttttaatctagaATATCCAAAAACgctcctcatttctgaagtgtttatctgtCTTACCTTGGTTACCGGTGCCTCCCACAGACTATTGTGCATAgtgcatattttctaaacattcctTTGAGGACTGAGCTCGTACCAAAGAAAGTTCCAGTTCCAGCACTTGCCACACAAACATCCGgtcATCGCTCTTTAGTGaggatctgtgattaattgtggaaaacattaaaaataaaccacTCCTTCAAAGGTTTCTCCCCGGCTACAACAAGCATGTCCTAAAGCAGCTTTTACTACCTTCAACGGGACATAAATATAGTccttgtcccatgacttctggcatatAAATGCATTTCTTCCTGTTCCAAAACCAAAATTTGGATGAGATGCTTAGTCTGCTTACATTTCTCCActcatttattcagtttttcCCTTTCATTCGTCACCCATCTGTAACCTGGACAGCTGGTTAATACCTGAACACGTgtgagactgactgactgagcaATGGCTAATGCCATCTGTAGTGTAACATAAGCGTGGAATAGAAGCATCAGTGCCACGTTTCAGCCAAGGAATCGCGTCAGTGGAatggctgaactgcttgcaaaAGGTGTCATCACTTCTCAGAGGTAttcattgctctgtttacagTAATACAAAAGCATAATATAAAACTGTAGGACATCAGTACTGAGGAAGTCTCAATGCGTGAGAAATGAGAGAACTGCGACTCCATTCACCAGGTACTGAGGAGCTGACGGCTCTCAGCTCCAGGCGGGGCTCGGGAAGGAGTCGATTTGTACCATGTCCTGGCACGCTGTGCCCTGACTGGAGTAGGACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002651017.1 lncRNA upstream 7038 7031810 ~ 7039380 (+) False LOC111194296
TU188727 lncRNA upstream 13746 7029282 ~ 7032672 (+) True LOC111194296
TU188697 lncRNA upstream 112945 6931518 ~ 6933473 (+) True G139375
TU188689 lncRNA upstream 136757 6853944 ~ 6909661 (+) False G139371
TU188688 lncRNA upstream 189448 6853944 ~ 6856970 (+) True G139371
TU188732 lncRNA downstream 37248 7086977 ~ 7087682 (+) True G139401
TU189130 lncRNA downstream 142179 7191908 ~ 7192404 (+) True G139710
TU189132 lncRNA downstream 153203 7202932 ~ 7203256 (+) True G139712
TU189165 lncRNA downstream 426241 7475970 ~ 7476346 (+) True G139737
TU189166 lncRNA downstream 457323 7507052 ~ 7507357 (+) True G139738
XM_007258052.2 mRNA upstream 120 7041560 ~ 7046298 (+) True LOC103044361
XM_007258049.3 mRNA upstream 27888 7005464 ~ 7018530 (+) True LOC103043453
XM_022677925.1 mRNA upstream 42169 6995553 ~ 7004249 (+) True LOC103024705
XM_022677926.1 mRNA upstream 57047 6975971 ~ 6989371 (+) True LOC111194294
XM_015608064.2 mRNA upstream 77219 6958536 ~ 6969199 (+) True LOC103043149
XM_007258067.2 mRNA downstream 110291 7160020 ~ 7162262 (+) True LOC103025339
XM_007258057.2 mRNA downstream 115055 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA downstream 115156 7164885 ~ 7184403 (+) False psmb5
XM_022677941.1 mRNA downstream 180807 7230536 ~ 7250133 (+) True LOC103025648
XM_022677942.1 mRNA downstream 285275 7335004 ~ 7654533 (+) True LOC103025951
TU188724 other upstream 130 7041674 ~ 7046288 (+) False LOC103044361
TU188586 other upstream 779031 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 803847 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 886252 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 902517 6143375 ~ 6143901 (+) True LOC111194289
TU189488 other downstream 2111604 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2172880 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2490046 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2693969 9743698 ~ 9745355 (+) True G140103
TU189871 other downstream 2940189 9989918 ~ 9990296 (+) True G140258

Expression Profile