RNA id: TU188727


Basic Information

Item Value
RNA id TU188727
length 1575
lncRNA type inter_gene
GC content 0.43
exon number 9
gene id LOC111194296
representative True

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7029282 ~ 7039380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

caacatcaCTTCAtacaacacccccccccccccccagcctaATCAGTGCTAAACTGTGGTGACTTACTCCACAACCCACCTAAATGTTTAGAGACTCAGTTTGAATGCCACAACCAGTACACCCACAGATCAGTTGAATTAGATGTTTGATTTATTGAATACAAACATTCCTCAAACTAGAGAAACTGTATTATACAATTAGGCTAGCTATTAGAGAATAGTTTAGGACAACATTGGCTTCATCTAAATGGTGGAGGGGAATGAAGAGGAGCACTgggaaaaagaggaaaatagaaagaaaaaaatagaatagaaaaaattgaatagaaaaaaaaacttggcatAACAGACAACTTAGTCATATTTTACAGCAACATTTCAAGctgtattaaaatgatttaaagcaatcattacaaaaaaaaaaaatcacataaatgAGCTTACAGAGGCAACAATTCCAACAGTCTCTGGAATcactagagtttaaaaaaacttaaaaaaaaaaaaaatatattgtaggACAAATCCCGCACTGGACCGCCTGCTCTACAGTAACTTAAGTTACAGAGATGTGGAAACATCCTTCAGTTACACTAGGATTAACGACAGGCCCCCACCCCAGAGACTCCTAGGACAGCACCAATCCTGGTCACATGCATCAGCTGTTATCCAGTGATTAATCCGTGACGGTAAGTGGCCCAAGTACAACAGGGTGAGCTATACCTCTGTTtaattctcttttatttcttgttcGGCACTGTGTGTCACAGCAAGCGCAAAGACCACTCTCCAAAACATTGTCCAGGAGCTCCCATCTTCCATTGTTTTTGTCATAATGACAAGCTTTCCTGCCATTGTCCAGACCTTTGGGGTCCCAAGCTACTAGTTTACAGTGAATGTAGACATCTTCTCCAAGAGCAAATTTGAAGGCTTGTAGATACATTCTGATTTCAGATGGGTTTCGTCTGGGTAAGAACCTGGAATTACTCTTCTTGCTTTCTATCAGACATCCCTTGTTTGCAATTATGGGGTAAATTTTGTTGCTTTGTTCCAGCTCTGGGgtcgtggaggccacacactcTTCCAGCAGCAGAACCAGGGGCTGATGAGCCTGCTGCTCAACAGCAGCAGCGATTGAGATTAGTGAACCCAGGGGGAACGTAGTTGATGTGGCCACACCACTAAAGTCCtCTTTCATGAAGTTCATATGGAAGACCAGGTCCCCCTTTCCATTGACAATAGGAGAGAAGAAGCCGGAAGGGTTTTTGGTTGAAGGCTCTGTTGACAGTTCATTCTCAAACACAATCTCATCTTCAGTCACCAGTCTCCTGAAACTGCAGTCATCAAACCTTGCATAAAATATGGCCTCTGCCCCCCCAGGTCTGACTGATATACTGGAGGGAAGGCAGCTCCCCAGCCGGAGGAACCAGGGGTCAGTCAGAGACTGGGAGTCAGTCCATCTCACCGAGACAGAGCTTCTGCCACAGTCCACAGACACTTCTAAGGAAACAAAGAGAAACAGGTTcagattaatataaaaacaaacactacCTTTAGAACCGAAACCATTAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA upstream 95809 6931518 ~ 6933473 (+) True G139375
TU188689 lncRNA upstream 119621 6853944 ~ 6909661 (+) False G139371
TU188688 lncRNA upstream 172312 6853944 ~ 6856970 (+) True G139371
TU188679 lncRNA upstream 206596 6821915 ~ 6822686 (+) True G139362
TU188658 lncRNA upstream 261038 6768023 ~ 6768244 (+) True G139347
TU188725 lncRNA downstream 13746 7046418 ~ 7049729 (+) True G139395
TU188732 lncRNA downstream 54305 7086977 ~ 7087682 (+) True G139401
TU189130 lncRNA downstream 159236 7191908 ~ 7192404 (+) True G139710
TU189132 lncRNA downstream 170260 7202932 ~ 7203256 (+) True G139712
TU189165 lncRNA downstream 443298 7475970 ~ 7476346 (+) True G139737
XM_007258049.3 mRNA upstream 10752 7005464 ~ 7018530 (+) True LOC103043453
XM_022677925.1 mRNA upstream 25033 6995553 ~ 7004249 (+) True LOC103024705
XM_022677926.1 mRNA upstream 39911 6975971 ~ 6989371 (+) True LOC111194294
XM_015608064.2 mRNA upstream 60083 6958536 ~ 6969199 (+) True LOC103043149
XM_007258047.3 mRNA upstream 79138 6945678 ~ 6950144 (+) True c16h14orf119
XM_007258052.2 mRNA downstream 8888 7041560 ~ 7046298 (+) True LOC103044361
XM_007258067.2 mRNA downstream 127348 7160020 ~ 7162262 (+) True LOC103025339
XM_007258057.2 mRNA downstream 132112 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA downstream 132213 7164885 ~ 7184403 (+) False psmb5
XM_022677941.1 mRNA downstream 197864 7230536 ~ 7250133 (+) True LOC103025648
TU188586 other upstream 761895 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 786711 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 869116 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 885381 6143375 ~ 6143901 (+) True LOC111194289
LOC111194229 other upstream 887684 6141005 ~ 6141598 (+) True LOC111194229
TU188724 other downstream 9002 7041674 ~ 7046288 (+) False LOC103044361
TU189488 other downstream 2128661 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2189937 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2507103 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2711026 9743698 ~ 9745355 (+) True G140103

Expression Profile