RNA id: XR_002651017.1


Basic Information

Item Value
RNA id XR_002651017.1
length 374
lncRNA type inter_gene
GC content 0.48
exon number 4
gene id LOC111194296
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 7029282 ~ 7039380 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGGGTTTTTGGTTGAAGGCTCTGTTGACAGTTCATTCTCAAACACAATCTCATCTTCAGTCACCTATAACAGAGAACAAAACCCAAGACTTGATAAGAGAgactatataaacacacaaataggCAGCAGCCTATGGAGCATGACTACACACTGGTGGTCTGACTGATATACTGGAGGGAAGGCAGCTCCCCAGCCGGAGGAACCAGGGGTCAGTCAGAGACTGGGAGTCAGTCCATCTCACCGAGACAGAGCTTCTGCCACAGTCCACAGACACTTCTAAGGAAACAAAGAGAAACAGGGACAGTACCTCTGATAAGAACACACAACACTGTAGGTGAAGGATGCAGGATTCGGCTTTGGTAAGGGCCGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188697 lncRNA upstream 98337 6931518 ~ 6933473 (+) True G139375
TU188689 lncRNA upstream 122149 6853944 ~ 6909661 (+) False G139371
TU188688 lncRNA upstream 174840 6853944 ~ 6856970 (+) True G139371
TU188679 lncRNA upstream 209124 6821915 ~ 6822686 (+) True G139362
TU188658 lncRNA upstream 263566 6768023 ~ 6768244 (+) True G139347
TU188725 lncRNA downstream 7038 7046418 ~ 7049729 (+) True G139395
TU188732 lncRNA downstream 47597 7086977 ~ 7087682 (+) True G139401
TU189130 lncRNA downstream 152528 7191908 ~ 7192404 (+) True G139710
TU189132 lncRNA downstream 163552 7202932 ~ 7203256 (+) True G139712
TU189165 lncRNA downstream 436590 7475970 ~ 7476346 (+) True G139737
XM_007258049.3 mRNA upstream 13280 7005464 ~ 7018530 (+) True LOC103043453
XM_022677925.1 mRNA upstream 27561 6995553 ~ 7004249 (+) True LOC103024705
XM_022677926.1 mRNA upstream 42439 6975971 ~ 6989371 (+) True LOC111194294
XM_015608064.2 mRNA upstream 62611 6958536 ~ 6969199 (+) True LOC103043149
XM_007258047.3 mRNA upstream 81666 6945678 ~ 6950144 (+) True c16h14orf119
XM_007258052.2 mRNA downstream 2180 7041560 ~ 7046298 (+) True LOC103044361
XM_007258067.2 mRNA downstream 120640 7160020 ~ 7162262 (+) True LOC103025339
XM_007258057.2 mRNA downstream 125404 7164784 ~ 7184403 (+) True psmb5
XM_022677940.1 mRNA downstream 125505 7164885 ~ 7184403 (+) False psmb5
XM_022677941.1 mRNA downstream 191156 7230536 ~ 7250133 (+) True LOC103025648
TU188586 other upstream 764423 6266816 ~ 6267387 (+) True G139282
XR_002651011.1 other upstream 789239 6238156 ~ 6242571 (+) True LOC103028159
TU188563 other upstream 871644 6159720 ~ 6160166 (+) True G139268
LOC111194289 other upstream 887909 6143375 ~ 6143901 (+) True LOC111194289
LOC111194229 other upstream 890212 6141005 ~ 6141598 (+) True LOC111194229
TU188724 other downstream 2294 7041674 ~ 7046288 (+) False LOC103044361
TU189488 other downstream 2121953 9161333 ~ 9162505 (+) True LOC103030954
TU189503 other downstream 2183229 9222609 ~ 9223156 (+) False LOC103030224
TU189594 other downstream 2500395 9539775 ~ 9540810 (+) True G140062
TU189643 other downstream 2704318 9743698 ~ 9745355 (+) True G140103

Expression Profile