RNA id: TU188974


Basic Information

Item Value
RNA id TU188974
length 2552
RNA type TUCP
GC content 0.36
exon number 4
gene id G139587
representative False

Chromosome Information

Item Value
chromosome id NC_035912.1
NCBI id CM008315.1
chromosome length 41032606
location 6417385 ~ 6430319 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cttaataattataattagtgTTGTGAGTCCTGATGGGTCTCATGGTTGAGGTGATCTAGAGTCAGAGAGTATTTGTAAGAGTAACTAAAGCAGTGCTTCCACTGATGCTCTGACTTTTGGAAAACCAATTTCTCTCCAAGTTAATCCAAaGGCTTCAACCCCAAAAAACCCTCTGTTGTCGATCCTGTCTGGCACTGACAATGGGCAGGAGTTGTGTCTGGCTGCAGGGTTCTTCCCTAAAGTGGGGGACATGTCTCTGACATTAGAAGGTGGAAACAGTGAAAAACATAATATCAGCAATGCTGCACTCTCCAAAAGCAGCACATATTACTATGCTGGCTCCTCCTCTAAGAGCATCGAAAAATGCCAGATGCAAGGACAGGAAACTACGGCAAAGGGTGATGGAAAAGCTTCTCCAGAGGAAAACAAAGAAGGTCAAGTTAATCCTACCTGCAAGACCCCCACTATTAAGACCAGAGTTACCACATCCACCATTGACCCTAAGGCGAACGCCATGTCTCTGATTGTGACGGCCGTCAGGATCCTGCTGGCTAAAGGGGTTGCGGTAAATGTGATGATGACCATTAAAGCCTTTCTTgtctgaagcaaaaaaaaaaaagaatttaaatgtttataaaactcTGTCAGGGTTCTGTTTAATTCAACATTGCTGATCTGCAGAAAATAATaatgctttttgcttttttatgtttagtatAATTTTTTAGGGATGCACAGATATGGGAATTGTTGAATTGTGATGCAGATATTCAATATTTAGCATAGacaatcattttcattttccaactcctgctggaaaatgaaatctgcatctccataaaagttgtcagtagcagagggaagcatgaagtgctgtaaaattgtgtgggaaaacaaaactgcactgactttagacttgataatagaacacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgaccatcagtacattttacatttaactcAAGTCTAAAGACAgtacagtgttttcccagaaaagcttacagcacttcatgttttcCTCGGCTGActacttttatagagatgtggattttattttccagcaggcatactgcccacactgccaaaagtaccaattggtcttatataatattcaaattttctgagaaatTGACTTTTTGGTTTTGATTGCCTGAGTTTTACATTtcgaactaaattactgaaataaaataacttttcaatgataataaatatttttagatgCATCTGTACTCCAACAAAGCTGGACATCCCTTTTTTGatacagttaataaaaaaaaaaatgaatgagcaggtgtcccaatactttgaTCCATATAGTGTAACTGCCAATGCGAATACATAATCATTAAAAGTTGATTGAATTGGTACATACTGTACCTGGATTACCATTATCGTGGCTAGAACATCAACATAGCAGTGCTTAATGCAATGCGTACAATAAAAACATCATCACATATCAATTTTTTGATGACACATTTGATTACATATACTTATTGTGTGATACAAATGTTTGAAATACCAGACAAAtctaaaaatgcaaataattttAAGCAAATATCTGCTCCTATAAAATGATATGATTCTGATATCATGCTGCATCCTTCAGTATCATTGTTCGTGTGCATATTGTATGTTTTAAGCTAAGTTTATATAAtctgttttatagtttatatttccAGTAGTAcagtttattcattttagtCTTTAGTATGATGAAGggatatatgtatgtatatttaggGCTTTGCATAGTAGATAGTAGAGTAGTGATAAACTGcagttcaaaagtttggaaactcgctaataacatttttttatagaaacTAATCCTgatttactgtaaacaaaaaaaaaaaaaactaattatgcTTACCtttttaaatggattttaaatGATTACTAGGAAATAGAgaatcaaaatattaaataaaaatgtacaacatttagaataaatatatcttttaaaagtaatttagtaTCCTGAATGCCTTATGTCTGAAAAGTAGGGTTTAATTTCTAAGCCAAataattttacagaaaaaaataaataaaataaaaaagtaaatcttGGTTACACATGCTATGAATgtcatgtctattagactctatatcaggggtgtccaaactacggcccgcgggccatttgcggcctgtttccttttttggagcggcccgcgaggtattttagaaatagaatgaaagtggACCCGCTGTTAActaggtttttataatgtgagatttaaagtttgaacgctaggtgtcagaaacggccaaagagtctgagagggtgcgcagaaaaatgggccaaagagtctaaaagcggagaatgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcacatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagggtgcgcagaaaaatgggccaaagagtct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU188981 lncRNA downstream 2014 6334767 ~ 6415371 (-) True G139593
TU188869 lncRNA downstream 8793 6406222 ~ 6408592 (-) True G139500
TU188835 lncRNA downstream 54416 6310200 ~ 6362969 (-) False G139487
TU188834 lncRNA downstream 85196 6310200 ~ 6332189 (-) False G139487
TU188832 lncRNA downstream 107784 6304969 ~ 6309601 (-) False G139487
TU188975 lncRNA upstream 80007 6509352 ~ 6581814 (-) True G139588
TU189002 lncRNA upstream 135558 6564903 ~ 6642487 (-) False lamc1
TU189019 lncRNA upstream 300360 6729705 ~ 6731658 (-) True G139624
TU189008 lncRNA upstream 306748 6736093 ~ 6738942 (-) True G139618
TU189027 lncRNA upstream 324637 6753982 ~ 6754437 (-) True G139631
XM_007258022.3 mRNA downstream 211536 6202808 ~ 6205849 (-) True LOC103029970
XM_022677913.1 mRNA downstream 362652 6038070 ~ 6054733 (-) False LOC111194281
XM_022677914.1 mRNA downstream 362652 6038070 ~ 6054733 (-) True LOC111194281
XM_022677912.1 mRNA downstream 363046 6038070 ~ 6054339 (-) False LOC111194281
XM_022677699.1 mRNA downstream 394789 6021098 ~ 6022596 (-) True LOC111194226
XM_007258031.3 mRNA upstream 10304 6439649 ~ 6473720 (-) False smg7
XM_007258029.3 mRNA upstream 10304 6439649 ~ 6473720 (-) True smg7
XM_022677894.1 mRNA upstream 81752 6511097 ~ 6549467 (-) True lamc2
XM_022677891.1 mRNA upstream 135612 6564957 ~ 6689723 (-) True lamc1
XM_022677901.1 mRNA upstream 275024 6704369 ~ 6717087 (-) False LOC103038610
TU188831 other downstream 42676 6304969 ~ 6374709 (-) True G139487
XR_002651013.1 other downstream 293260 6120119 ~ 6124125 (-) True LOC103026010
XR_002651012.1 other downstream 363046 6022609 ~ 6054339 (-) False LOC111194281
TU188844 other downstream 406518 6009053 ~ 6010867 (-) True G139489
TU188315 other downstream 1086580 5330078 ~ 5330805 (-) True G139105
TU189125 other upstream 739620 7168965 ~ 7182783 (-) True G139706
TU189726 other upstream 3279944 9709289 ~ 9714037 (-) False LOC103044908
TU189989 other upstream 3639155 10068500 ~ 10099769 (-) True G140342
TU189985 other upstream 3668823 10098168 ~ 10099769 (-) False G140342
TU190197 other upstream 4081744 10511089 ~ 10514807 (-) True G140472

Expression Profile